bims-auttor Biomed News
on Autophagy and mTOR
Issue of 2026–05–03
twenty-two papers selected by
Viktor Korolchuk, Newcastle University



  1. Front Cell Dev Biol. 2026 ;14 1776289
      Autophagy, a conserved intracellular degradation and recycling process, maintains cellular homeostasis by eliminating damaged organelles, misfolded proteins, and invading pathogens. Dysregulation of autophagy either excessive or insufficient contributes to the pathogenesis of numerous human diseases, spanning the respiratory, locomotor, circulatory, digestive, urinary, and nervous systems, as well as cancer. This Mini Review summarizes the core mechanisms and classification of autophagy, highlights its dual roles in various pathological conditions, discusses existing controversies and research gaps, and outlines potential future directions for therapeutic targeting. A concise overview of key findings provides readers with an updated understanding of autophagy's multifaceted functions in disease development and treatment.
    Keywords:  autophagy; cancer; chaperone-mediated autophagy; human diseases; macroautophagy; mitophagy; neurodegenerative disorders; therapeutic targeting
    DOI:  https://doi.org/10.3389/fcell.2026.1776289
  2. Autophagy. 2026 Apr 25.
      Cells possess an intrinsic recycling system called macroautophagy/autophagy, which delivers obsolete or damaged cytoplasmic components into the vacuole for degradation and reuse. Autophagy-mediated breakdown of organellar membrane lipids supplies fatty acids for the synthesis of triacylglycerols (TAGs), which are then packaged into subcellular organelles called lipid droplets (LDs). Conversely, autophagy contributes to TAG turnover by delivering LDs into vacuoles for breakdown by resident acid lipases. Additionally, LDs can undergo degradation through cytosolic lipolysis mediated by SDP1 (Sugar-Dependent1) lipase in Arabidopsis. Autophagy-mediated LD, a process referred to as lipophagy, has been described in plants. Nevertheless, the precise mechanisms of lipophagy and the specific types of vacuoles involved remain unclear. Here, we show that overexpression of autophagy genes ATG5 or ATG8 promotes autophagic activity and significantly reduces LD accumulation. We demonstrate that the decreased LD abundance is not due to increased LD degradation mediated by SDP1 but is dependent on autophagy. The abundance of vacuoles specifically labeled by δ-TIP3 (delta-tonoplast intrinsic protein 3) was markedly decreased in ATG5-overexpressing lines. In addition, disruption of autophagic genes prevented the formation of both δ-TIP3-positive vacuoles and the mysterious vacuolar lumen structures previously termed bulbs, indicating their autophagic origin. Furthermore, confocal imaging analysis revealed close associations between LDs and δ-TIP3-labeled vacuoles, as well as the presence of LDs within vacuoles delimited by δ-TIP3. Together, our findings indicate that overexpression of autophagy genes triggers lipophagy and identify a distinct type of vacuole involved in this process.
    Keywords:  ATG5; ATG8; Arabidopsis thaliana; autophagic vacuole; lipid droplet; lipophagy
    DOI:  https://doi.org/10.1080/15548627.2026.2664350
  3. Transl Neurosci. 2026 Jan;17(1): 20250386
      Parkinson disease (PD) and its variants pose a dramatic burden on patients, families and society. Deciphering the mechanistic underpinnings of PD are critical goals of researchers to develop new therapeutic approaches. Among the pathways affected, autophagy draws increasing attention owing to its relationship to several genes implicated in PD and parkinsonism. This review summarizes novel insight into autophagic and in particular mitophagic processes regulated by parkin and PINK1, and how their deregulation may contribute to or cause the disease.
    Keywords:  PINK1; Parkinson disease; autophagy.; mitophagy; parkin
    DOI:  https://doi.org/10.1515/tnsci-2025-0386
  4. Autophagy. 2026 Apr 27. 1-2
      Age-associated changes in organelle structure are often viewed as passive deterioration. Our recent work challenges this view by identifying an evolutionarily conserved, age-onset remodeling of the endoplasmic reticulum (ER) that is actively driven by ER-phagy. Across multiple cell types and organisms, the ER undergoes a reduction in volume and a shift from rough ER sheets to tubular networks. ER compositional shifts accompany these changes in morphology, with declines of the proteostasis machineries enriched within rough ER and preservation of lipid-associated enzymes tied to tubular subdomains. This remodeling occurs via autolysosomal targeting and degradation of the ER, establishing selective ER-phagy as a conserved aspect of the aging process. Notably, ER-phagy is also engaged by multiple longevity paradigms, resulting in precocious, spatial reorganization of the ER. Furthermore, ER-phagy is required for lifespan extension during mTOR impairment, indicating that ER turnover is adaptive and contributes to longevity. These findings reveal ER-phagy as a regulator of organelle architecture and age-dependent shifts in cell metabolism, thus illuminating important roles for selective autophagy in shaping organelle identity and function across the lifespan.Abbreviations: ER: endoplasmic reticulum; TMEM-131: transmembrane protein 131; UPR: unfolded protein response; IRE-1: inositol-requiring enzyme 1; XBP-1: X-box binding protein 1; mTOR: mechanistic target of rapamycin.
    Keywords:  ER-phagy; Endoplasmic reticulum; mTOR; protein homeostasis; unfolded protein response
    DOI:  https://doi.org/10.1080/15548627.2026.2662429
  5. Cells. 2026 Apr 09. pii: 665. [Epub ahead of print]15(8):
      Actin is a key component of the cytoskeleton and plays diverse roles in cellular processes. Autophagy regulates homeostasis through various mechanisms that recycle nutrients and degrade unnecessary or harmful cellular components and aggregates. These two processes are engaged in a highly conserved crosstalk through which they regulate each other, including autophagolysosomal formation and regulation of actin dynamics. The regulation of autophagy is involved in cancer, neurodegeneration, infectious diseases, and inflammation, providing possible avenues for treatments for these diseases. In this review, we summarize current knowledge of the actin-autophagy interplay and regulation, and explore the possible implications for disease progression and therapies. Although more research is necessary to strengthen the effectiveness of therapies that target the regulation of autophagy and actin dynamics, significant strides have already been made, clearly indicating the potential benefit of targeting these processes.
    Keywords:  actin binding proteins; actin depolymerization; actin polymerization; actin remodeling; autophagy; cellular homeostasis; neurodegeneration; tumor metastasis
    DOI:  https://doi.org/10.3390/cells15080665
  6. Bioorg Chem. 2026 Apr 19. pii: S0045-2068(26)00421-9. [Epub ahead of print]177 109885
      Dysregulation of autophagy and mitophagy is a hallmark of neurodegenerative diseases, including Alzheimer's disease (AD). Chemical intervention targeting these pathways has emerged as one of the promising therapeutic strategies for neurodegenerative disorders. Here, we identified beauvericin as a candidate molecule that regulates autophagy and mitophagy through an organelle phenotypes-based high-throughput screening of a marine natural products library. Mechanistic analyses revealed that beauvericin engages NIPSNAP2 and promotes its activation, and enhances autophagic flux and mitophagy across multiple cell types. Moreover, in AD-relevant cellular models, beauvericin significantly reduced amyloid-β (Aβ) levels via lysosome-dependent degradation of BACE1. Collectively, these findings demonstrate that beauvericin activates autophagy and mitophagy via NIPSNAP2 and that chemical activation of these pathways can ameliorate AD-relevant cellular phenotypes, supporting its potential as a chemical intervention for neurodegenerative diseases.
    Keywords:  Alzheimer's disease; Autophagy; Beauvericin; High-throughput screening; Marine natural products; Mitophagy; NIPSNAP2
    DOI:  https://doi.org/10.1016/j.bioorg.2026.109885
  7. Autophagy. 2026 Apr 25. 1-3
      Despite decades of research identifying the core autophagy-related (ATG) gene products that execute macroautophagy (hereafter autophagy), a systems-level understanding of how the broader genome dynamically tunes this process remains limited. Most studies rely on bulk assays that capture cumulative degradation at a single time point, making it difficult to resolve how autophagy is activated, sustained, and terminated over time. In addition, approaches to quantify temporal response kinetics across thousands of genotypes in parallel at the population level have been lacking, hindering predictive modeling and the development of precise pharmacological strategies to modulate autophagy.
    Keywords:  Autophagy dynamics; autophagy termination; bioinformatics; systems biology; yeast
    DOI:  https://doi.org/10.1080/15548627.2026.2660121
  8. Autophagy. 2026 Apr 30.
      Macroautophagy/autophagy is a critical process for maintaining cellular homeostasis and has emerging implications in cancer biology. DRAM2 (DNA damage regulated autophagy modulator 2), a transmembrane protein enriched at lysosomal membranes, has been implicated in autophagy regulation; however, the upstream mechanisms governing its trafficking and function remain unclear. In this study, we identified RPS6KA3/RSK2, a stress-responsive kinase downstream of the MAPK pathway, as a novel upstream kinase of DRAM2. RPS6KA3/RSK2 interacted with and phosphorylated DRAM2 at Ser263 within its cytosolic tail. This phosphorylation was required for AP3D1/AP-3-dependent trafficking of DRAM2 to the late endosomal-lysosomal pathway, thereby facilitating autolysosome formation and sustaining autophagic flux. In contrast, the non-phosphorylatable DRAM2S263A mutant failed to bind AP3D1/AP-3, exhibited defective lysosomal trafficking, and was partially redistributed toward plasma membrane-proximal compartments, where it enhanced exosome secretion. Bioinformatic analyses revealed a strong positive correlation between RPS6KA3/RSK2 and DRAM2 expression in melanoma tissues, and elevated DRAM2 expression was associated with poor patient prognosis. Depletion of RPS6KA3/RSK2 or DRAM2 impaired autophagic flux and inhibited melanoma cell proliferation. Similarly, expression of the DRAM2S263A mutant suppressed melanoma progression in vitro and in vivo by disrupting autophagy. Moreover, DRAM2 protein levels were elevated in skin cancer tissues compared to normal tissues. Collectively, our findings uncover a phosphorylation-dependent trafficking switch that bifurcates DRAM2 function between autophagy and exosome secretion, and establish the RPS6KA3/RSK2-DRAM2 axis as a critical regulator of melanoma progression. This signaling pathway may represent a promising therapeutic target for autophagy-associated malignancies.
    Keywords:  Autophagy; DRAM2; RPS6KA3/RSK2; exosome; lysosomal trafficking; melanoma
    DOI:  https://doi.org/10.1080/15548627.2026.2667375
  9. Gene. 2026 Apr 25. pii: S0378-1119(26)00198-8. [Epub ahead of print] 150188
      Neurodegenerative diseases are increasingly recognized as systemic disorders that extend beyond the central nervous system and profoundly affect skeletal muscle. Muscle weakness and atrophy in these conditions are driven not only by denervation but also by mitochondrial dysfunction, chronic inflammation, and impaired proteostasis. Among the mechanisms underlying muscle deterioration, autophagy has emerged as a critical regulator of cellular quality control. Balanced autophagic flux is essential for the removal of damaged proteins and dysfunctional mitochondria, thereby preserving metabolic homeostasis and neuromuscular junction stability. Conversely, dysregulated autophagy contributes to proteotoxic stress and accelerates muscle degeneration in neurodegenerative disorders. Exercise is a potent physiological stimulus capable of modulating autophagy in skeletal muscle. Preclinical models and emerging clinical evidence indicate that appropriately prescribed exercise can restore impaired autophagic flux, enhance mitochondrial quality control, and improve muscle function in neurodegenerative and aging-related muscle loss. However, the effects of exercise are context- and intensity-dependent, underscoring the need for individualized therapeutic strategies. This review synthesizes current evidence on the interaction between exercise and autophagic regulation in neurodegenerative muscle loss. Exercise as a therapeutic strategy is supported by well-defined molecular and cellular mechanisms, including the regulation of autophagy and mitochondrial quality control.
    Keywords:  Autophagic flux; Exercise; Neurodegenerative diseases; Skeletal muscle
    DOI:  https://doi.org/10.1016/j.gene.2026.150188
  10. bioRxiv. 2026 Apr 15. pii: 2026.04.14.718098. [Epub ahead of print]
      Danon disease is a rare disorder caused by mutations in the LAMP2 gene, which encodes a lysosomal membrane protein key to the endolysosomal pathway and autophagy. Affected individuals show multisystemic alterations that include cardiomyopathy, skeletal muscle weakness, visual deficits and cognitive impairment. Here we establish a knockout LAMP2 line in Xenopus tropicalis that reproduces the characteristic cardiac activity, mobility impairments and vision deficits present in the disease. Damaged mitochondria were abundantly found in skeletal muscle fibers. LAMP2 mutant X. tropicalis detected light with a reduced preference for green wavelengths. Visual deficits were consistent with the finding of damaged mitochondria in the inner segment of rods but not in cones. Differences in autophagic flux were found in presynaptic terminals from photoreceptors and olfactory sensory neurons (OSNs), which establish the first synapse processing vision and olfaction, respectively. In wild-type animals autophagic shapes were observed in OSN terminals but were absent from photoreceptor ribbon synapses. In knockout LAMP2 tadpoles, autophagic organelles covered 7% of the OSN presynaptic terminal surface, a three-fold increase compared to photoreceptor terminals. These differences suggest that LAMP2 plays synapse-specific roles that could be an important determinant of the psychiatric manifestations present in Danon disease and support the use of LAMP2 X. tropicalis to shed new light on the pathological bases of this lysosomal storage disorder.
    DOI:  https://doi.org/10.64898/2026.04.14.718098
  11. Front Aging Neurosci. 2026 ;18 1738559
      Pink1 (PTEN-induced kinase 1) is a key guardian of mitochondrial quality via mitophagy; its mutations are tightly linked to early-onset PD. This review synthesizes how aging, exercise, and high-fat diet (HFD) modulate Pink1 activity and thereby PD risk. Aging down-regulates Pink1, impairing clearance of damaged mitochondria and promoting α-synuclein aggregation. Exercise up-regulates Pink1-Parkin signaling, enhances PGC-1α and brain-derived neurotrophic factor (BDNF), and protects dopaminergic neurons in humans and rodents. Conversely, chronic HFD suppresses Pink1, exacerbates oxidative stress, microglial activation and insulin resistance, accelerating Parkinson's disease pathology. Cross-species cautions (mouse vs. primate) are highlighted. Targeting Pink1-mediated mitophagy through lifestyle interventions offers a non-pharmacological strategy to delay PD onset and progression in aging populations.
    Keywords:  PINK1; Parkinson’s disease; aging; exercise; high-fat diet; mitochondrial quality control; mitophagy
    DOI:  https://doi.org/10.3389/fnagi.2026.1738559
  12. Cell Biochem Funct. 2026 Apr;44(4): e70214
      Cytochrome C (Cyt C) is a central mediator of intrinsic apoptosis, whereas its heme-free precursor, apocytochrome C (APO-Cyt C), competitively inhibits this process. Sodium aescinate (SA), a natural triterpene saponin, is known to facilitate the endosomal escape of protein drugs. We initially aimed to investigate the effects of enhancing endosomal escape efficiency on protein activity through the combination of SA and Cyt C. However, this study investigates an cytotoxicity observed when APO-Cyt C is combined with SA and aims to elucidate the underlying molecular mechanism. Contrary to its established anti-apoptotic function, APO-Cyt C, when co-administered with a non-toxic concentration of SA, induced potent, caspase-dependent mitochondrial apoptosis in cancer cells. This pro-apoptotic switch was not primarily triggered by BCL-2 family protein modulation, ROS generation, or calcium overload. Instead, the primary mechanism is the induction of excessive and lethal autophagy. SA was found to induce lysosomal membrane damage, evidenced by Galectin-9 recruitment, which initiates lysophagy. The addition of APO-Cyt C significantly amplified the autophagic flux, leading to decreased p62 levels and enhanced LC3-II turnover. Mechanistically, this synergy is driven by a dual impact on the AKT-mTOR-TFEB pathway: APO-Cyt C treatment decreased mTOR phosphorylation, while the combination promoted the nuclear translocation of the autophagy regulator, TFEB. Inhibition of autophagic flux using Bafilomycin A1 or Tetrandrine rescued cells from apoptosis, confirming that excessive autophagy is the direct cause of cell death. This study reveals a novel therapeutic strategy wherein an anti-apoptotic protein is converted into a potent pro-apoptotic agent. The combination of APO-Cyt C and SA triggers apoptosis by overwhelming the cell with excessive autophagic flux, driven by synergistic inhibition of the mTOR-TFEB axis. These findings highlight the therapeutic potential of modulating autophagy and suggest that combining mTOR inhibitors with lysosome-targeting agents like SA could be an effective anti-cancer strategy.
    Keywords:  AKT‐mTOR‐TFEB pathway; Sodium Aescinate; apocytochrome C; apoptosis; autophagy
    DOI:  https://doi.org/10.1002/cbf.70214
  13. Nat Commun. 2026 Apr 30.
      Autophagy is a fundamental process for maintaining cell homeostasis, and STX17-mediated autophagosome-lysosome fusion is essential for cargo degradation and recycling. The translocation of STX17 to the autophagosome membrane is necessary for the fusion, yet the mechanism governing this process remains to be fully elucidated. Here, we show that following starvation, STX17 is acetylated at lysine 254 (K254), and this promotes the autophagosomal translocation of STX17 and subsequent autophagosome-lysosome fusion. Acetyltransferase GCN5 mediates STX17 K254 acetylation, which is counteracted by the deacetylase SIRT1. Moreover, autophagosomal translocation of K254-acetylated STX17 is mediated by myosin Ⅵ. Therefore, our research highlights the importance of acetylation and F-actin-based motor proteins in autophagosomal translocation of STX17 and autophagosome-lysosome fusion.
    DOI:  https://doi.org/10.1038/s41467-026-72476-8
  14. Cell Physiol Biochem. 2026 Apr 06. 60(2): 136-174
      Neurodegenerative diseases (NDDs) are defined by the gradual degeneration of neuronal cells, wherein the accumulation of misfolded proteins can lead to memory impairments, motor dysfunctions, and other deteriorations. Despite the widespread impact, there are currently no viable pharmaceuticals to treat these disorders. The mTOR protein is a crucial regulator of cell survival, growth, autophagy, and apoptosis. Targeted modulation of mTOR signaling holds promise for mitigating neurodegeneration in Alzheimer's, Huntington's, ALS, and Parkinson's disease. Understanding its interactions with pathways such as PI3K/Akt, AMPK, and SIRT1 is essential for developing effective therapeutics.
    Keywords:  mTOR ; Brain ; Neurodegeneration ; Autophagy ; Apoptosis ; Therapeutics
    DOI:  https://doi.org/10.33594/000000858
  15. Front Cell Infect Microbiol. 2026 ;16 1792069
      Dynamic interactions between autophagosomes and lysosomes are key to ensuring the trafficking of mycobacteria through the degradative autophagolysosomal pathway. Phosphoinositides (PtdIns), play critical roles in directing the trafficking of pathogens through phagosomal or autophagosomal degradation pathways. Phosphoinositide kinase, FYVE-type zinc finger containing, PIKfyve catalyzes the phosphorylation of PtdIns(3)P to PtdIns(3,5)P2. Generation of PtdIns(3,5)P2 is critical for the maturation of autophagosomes and the proper functioning of lysosomes. The involvement of PIKfyve in immune defense against mycobacterial infections has not been addressed. Here, we studied the role of PIKfyve in Mycobacterium marinum (Mm) infection of zebrafish larvae using two chemical inhibitors of the enzymatic activity of PIKfyve, YM201636 and Apilimod. We demonstrate that PIKfyve is required for Mm-containing vesicle trafficking towards degradative lysosomes. We found that in the infected macrophages, PIKfyve facilitates autophagy pathway activation and (auto)phagosome maturation, and protects against cell death, thus boosting the host immune response against mycobacterial infection. This study links PIKfyve to the autolysosomal defense against a mycobacterial pathogen.
    Keywords:  PIKfyve; autophagy; innate immunity; mycobacterial infection; phagosome maturation; zebrafish
    DOI:  https://doi.org/10.3389/fcimb.2026.1792069
  16. bioRxiv. 2026 Apr 19. pii: 2026.04.15.718770. [Epub ahead of print]
      Increased literature support the pathogenetic role of dysfunctional energetic metabolism in the setup and progression of organ damage and failure. Genetic diseases often offer the possibility to investigate pathogenetic mechanisms. In particular, excessive cardiac damage is the most frequent cause of mortality in Fabry disease (FD), a genetic condition caused by deficient α-galactosidase A (GLA) activity, leading to globotriaosylceramide (Gb3) accumulation. Beyond Gb3 storage, metabolic alterations and mitochondrial dysfunction, supported by in vitro evidence or studies in other tissues, may contribute to FD cardiomyopathy. This study investigated, for the first time, the mechanisms of mitochondrial involvement in FD, its role in determining cardiac manifestations, and its potential as a therapeutic target. We used a humanized FD mouse model (R301Q-Tg/GLA knockout), along with derived embryonic fibroblasts and neonatal and adult cardiomyocytes, to assess mitochondrial function across the lifespan. FD cells showed impaired mitophagy, reduced mitochondrial respiration, and increased reactive oxygen species production. Importantly, this mitochondrial dysfunction exacerbated the lysosomal deficit in FD cells, forming a vicious cycle. In cardiomyocytes, these alterations progressed with age, leading to the accumulation of dysfunctional mitochondria, energetic failure, and, in adult hearts, terminal mitochondrial damage and apoptosis. These events ultimately result in cardiac remodeling and dysfunction, including hypertrophy and diastolic impairment. Indeed, L-arginine supplementation, which promotes NO/PGC-1α-dependent mitochondrial rescue, prevented the development of cardiac abnormalities in FD mice. Our findings identify early mitochondrial dysfunction as a key driver of FD cardiomyopathy and support mitochondrial targeting, including L-arginine supplementation, as a promising adjuvant therapeutic strategy. The mechanistic link between lysosomal dysfunction, altered mitochondrial turnover, and energetic collapse emerges as a key targetable pathway in organ damage, extending beyond FD.
    Graphical abstract:
    Cardiac manifestations vs mitochondrial alterations in Fabry disease the visible tip and the hidden base of the iceberg: Cardiac manifestations in hR301Q Tg/KO mice become evident from 9 months of age. However, mitochondrial homeostasis is perturbed much earlier (neonatal to young stages), with impaired mitophagy, reduced mitochondrial respiration and membrane potential, increased ROS production and PGC-1α downregulation. At later stages, from 6 months of age, mitochondrial dysfunction progresses and begins to impact cellular energetics, as indicated by reduced ETC expression and the onset of energetic deficit (ATP reduction). The resulting energetic collapse, together with progressive mitochondrial leakage, leads to cardiomyocyte hypertrophy, apoptosis, and dysfunction, which become detectable from 9 months of age, when clinical signs emerge. These findings support a mechanistic model in which 1) lysosomal incompetence due to GLA deficit is the initiating event inducing impairment of mitophagy; 2) Unsuccessful mitophagy, induces downregulation of PGC-1a-dependent mitogenesis; 3) exhausted mitochondria accumulate, inducing energetic collapse (able to exacerbate lysosomal dysfunction and further perturb mitophagy in a vitious cycle); 4) ultimate mitochondrial leakage induces Cytochrome C release and apoptosis activation. This cascade of molecular events is responsible for clinical manifestations, and mitochondrial targeting prevents cardiac organ damage.
    Significance statement: Fabry disease is a rare genetic disorder in which cardiac complications are a major cause of death, yet underlying mechanisms remain unclear. Here, we identify mitochondrial dysfunction as an early pathogenic event associated with impaired mitophagy, whereby defective mitochondrial quality control both results from and exacerbates lysosomal dysfunction, creating a self-reinforcing cycle that drives disease progression. Using a humanized model, we demonstrate that mitochondrial dysfunction is a key determinant of cardiac phenotype in vivo, driving energetic failure, oxidative stress, and cardiac damage. Importantly, L-arginine treatment restores mitochondrial function and prevents cardiac abnormalities. Our findings define a broadly relevant pathogenic axis linking lysosomal dysfunction, mitophagy failure, and mitochondrial impairment, that lead to impaired energetic metabolism and consequent cardiac hypertrophy, independently from GB3 accumulation. The implications of our study go beyond Fabry disease and support the therapeutic targeting of cellular energy homeostasis to prevent and treat organ damage and failure in chronic diseases.
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    DOI:  https://doi.org/10.64898/2026.04.15.718770
  17. Geroscience. 2026 Apr 30.
      Senescent cells accumulate with age and contribute to tissue dysfunction and chronic inflammation. Senolytic agents that selectively eliminate senescent cells hold therapeutic promise; however, few mechanistic classes have been established. Using Cell Painting-based morphological profiling, we identified a distinct cluster of senolytic compounds comprised of both known and novel autophagy inhibitors, including AZ191, bafilomycin A1, chloroquine, daurisoline, dauricine, MCOPPB, and its derivative MS1108. These compounds selectively eliminated senescent cells by disrupting autophagic flux. Our findings reveal senescent cell dependence on autophagy as an essential survival mechanism, define the existence of a mechanistically distinct class of senolytics acting through autophagy inhibition, and demonstrate the predictive value of Cell Painting in aging-related drug discovery. Our results provide new insights into senescent cell vulnerability and expand the therapeutic landscape for aging-related pathologies by highlighting autophagy as a targetable dependency.
    Keywords:  Autophagy; Cell Painting; Proteotoxic stress; SASP; Senescence; Senolytics
    DOI:  https://doi.org/10.1007/s11357-026-02258-z
  18. Geroscience. 2026 May 01.
      Lysosomal dysfunction is a hallmark of cellular senescence, yet the mechanisms governing lysosomal protein trafficking remain incompletely understood. Here, we show that CD-M6PR, a principal receptor for lysosomal enzyme transport, is markedly reduced in senescent fibroblasts and in aged mice and humans, and that its loss correlates with the severity of autolysosomal impairment. Mechanistically, the reduction of CD-M6PR in senescent cells mainly stems from the accelerated proteasome-mediated degradation. Utilizing structural predictions and experimental validation, we identified the E3 ubiquitin ligase ZNRF2 as a critical mediator of CD-M6PR's rapid degradation in senescent cells, facilitated by ZNRF2's elevated expression in these cells. We further link stress-induced mTORC1 activation to increased ZNRF2 expression, which in turn reduces CD-M6PR protein levels, impairs lysosomal enzyme trafficking, and compromises autolysosomal function, thereby exacerbating cellular senescence. Collectively, these data define a previously unrecognized mTORC1-ZNRF2-CD-M6PR axis and reveal a novel mechanism by which aberrant mTORC1 signaling promotes lysosomal dysfunction and senescence, with potential implications for therapeutic targeting of age-related pathologies.
    Keywords:  Aging; CD-M6PR; Cellular senescence; Lysosome; ZNRF2
    DOI:  https://doi.org/10.1007/s11357-026-02253-4
  19. PLoS One. 2026 ;21(4): e0347781
      Mitochondrial quality control is a crucial factor governing self-renewal capacity, maintenance of metabolic balance, and cellular longevity in stem cells. Impaired mitophagy significantly contributes to cellular senescence, causing accumulation of damaged mitochondria and impaired proliferative capacity of cells, leading to reduced therapeutic efficiency. This study explores mitophagy's role in regulating senescence in human adipose-derived mesenchymal stem cells (HADMSCs) and evaluates the therapeutic potentiality of antioxidants-melatonin and coenzyme Q10 (CoQ10) targeting mitochondria. It also examines the impact of antioxidant intervention aimed at improving the fate and survival, thereby establishing a connection between metabolic reprogramming and mitophagy. Our study found that stress-induced HADMSCs have reduced Mitochondrial Membrane potential (MMP), increased ROS, and increased senescence-associated β-galactosidase activity as observed through fluorescence-based imaging and biochemical assays. It was observed that antioxidant intervention has prevented the damage caused by the stress and reduced mitochondrial ROS and lipid peroxidation and has significantly restored mitophagy markers like Parkin, NDP52, BNIP3, BNIP3L/Nix, and LC3B. Our findings suggest that antioxidants induced pharmacological stimulation of mitophagy could potentially reverse stem cell aging and prevent functional decline, thereby improving regeneration and offering new insights and perspectives on mitochondrial health for improved efficiency of stem cell transplantation, maintenance and longevity of HADMSCs.
    DOI:  https://doi.org/10.1371/journal.pone.0347781
  20. EMBO Rep. 2026 Apr 27.
      Mitochondrial and lysosomal abnormalities co-occur in aging-related diseases with progressive tissue atrophy. It remains unclear whether these two pathogenic pathways affect tissue homeostasis independently, convergently or epistatically. We show that mitochondrial protein import stress causes vacuolar damage in yeast, manifested by V-ATPase disassembly, and vacuolar deacidification and fragmentation. In a mouse model of mitochondrial protein import stress induced by overloading of the nuclear-encoded ANT1 protein, we observe progressive muscle atrophy independent of bioenergetic defects. Like in yeast mutants with severe vacuolar damage, genes involved in amino acid uptake/biosynthesis, one-carbon metabolism, lysosomal biogenesis and iron homeostasis are activated in the skeletal muscle of Ant1-transgenic mice. The affected muscles accumulate glycogen, lipofuscin and poorly processed multivesicular bodies. Despite activation of lysosomal repair and lysophagic pathways, autophagic flux is severely stalled. During aging, various proteolytic cathepsins are increasingly released from the lysosomal lumen into the cytosol. Together with proteasomal activation, this may contribute to unbalanced proteostasis, reduced myofiber size and skeletal muscle atrophy. Our study therefore discovered an evolutionarily conserved mitochondria-to-lysosome proteotoxic axis that affects tissue mass homeostasis during aging.
    DOI:  https://doi.org/10.1038/s44319-026-00774-9
  21. Autophagy. 2026 Apr 29.
      Cardiac fibrosis is a defining pathological feature of diabetic cardiomyopathy (DCM), and excessive activation of cardiac fibroblasts plays a critical role in regulating cardiomyocyte function through paracrine signaling. CCN1 (cellular communication network factor 1), an extracellular matrix protein involved in intercellular communication, has been suggested to influence cardiac remodeling, although its specific impact on cardiomyocytes in DCM has remained unclear. In this study, we found that CCN1 expression was markedly elevated in cardiac tissues from DCM mouse models and in insulin-resistant cell models, with fibroblasts serving as the primary source. Proteomic analysis and co-culture experiments demonstrated that CCN1 suppressed cardiomyocyte macroautophagy/autophagy. To determine its role in vivo, we generated fibroblast-specific ccn1 knockout mice and established a DCM model, demonstrating that ccn1 deletion ameliorated cardiac dysfunction and restored autophagic activity. We further identified ITGAV-ITGB1/integrin αvβ1 as the receptor mediating CCN1 signaling in cardiomyocytes. Molecular dynamics simulations and co-immunoprecipitation experiments confirmed that CCN1 engaged ITGAV-ITGB1/integrin αvβ1 through its cysteine-knot-containing (CT) domain. Mechanistically, this interaction activated the downstream PTK2/FAK-MTOR signaling pathway, leading to inhibition of cardiomyocyte autophagy. Together, these findings reveal a previously unrecognized fibroblast-cardiomyocyte signaling axis in which fibroblast-derived CCN1 drives DCM progression by suppressing autophagy through ITGAV-ITGB1/integrin αvβ1-dependent signaling. This work provides mechanistic insight into the pathogenesis of DCM and identifies CCN1 as a potential therapeutic target for mitigating disease onset and progression.
    Keywords:  Autophagy; cardiac hypertrophy; crosstalk; extracellular matrix; lysosomal function; paracrine signaling
    DOI:  https://doi.org/10.1080/15548627.2026.2667721
  22. bioRxiv. 2026 Apr 17. pii: 2026.04.16.719007. [Epub ahead of print]
      Cellular senescence is a stable cell-cycle arrest state associated with characteristic phenotypes, including enlarged cell morphology, altered secretory signaling, and pronounced lysosomal remodeling. Senescent cells commonly accumulate increased numbers of enlarged lysosomes with changes in acidity and degradative capacity, creating an opportunity for simple live-cell readouts of senescence-linked organelle remodeling. Here, I describe a live-cell lysosomal profiling protocol that uses LysoTracker Deep Red, an acidotropic fluorescent dye, to label and quantify acidic organelles in individual living cells as an indicator of senescence-associated lysosomal expansion. The method is demonstrated in IMR-90 human lung fibroblasts undergoing replicative senescence across serial passaging. The protocol details cell culture and passage tracking, LysoTracker staining, fluorescence imaging, and straightforward image-based quantification of lysosomal signal intensity and lysosome-enriched area per cell. As an optional validation step, senescence-associated β-galactosidase staining is performed on parallel cultures to confirm senescent cell identity. Representative outcomes show increased LysoTracker signal and expanded lysosome-enriched regions in late-passage cultures compared to early-passage controls, consistent with lysosomal remodeling during senescence. This protocol is designed to be simple to adopt and can be adapted to other cell types or senescence-inducing stresses, providing a practical, quantitative complement to conventional endpoint assays.
    SUMMARY: This article presents a live-cell imaging protocol using LysoTracker Deep Red to quantify lysosomal remodeling as a marker of cellular senescence in IMR-90 human fibroblasts. We demonstrate quantitative lysosomal readouts derived from fluorescence imaging, including lysosome-enriched area and intensity measurements that can be summarized per cell and, when desired, as stitched-field, per-nucleus normalized metrics. Senescence status can be validated against senescence-associated β-galactosidase (SA-β-Gal) staining performed on parallel cultures. The method can be adapted to other cell types or senescence-inducing stresses and enables quantitative analysis of lysosomal remodeling during senescence.
    DOI:  https://doi.org/10.64898/2026.04.16.719007