bims-enlima Biomed News
on Engineered living materials
Issue of 2026–09–06
34 papers selected by
Rahul Kumar, Tallinna Tehnikaülikool



  1. Adv Mater. 2026 Aug 29. e74348
      Origami provides a versatile framework for shape-morphing, yet existing systems are limited to transitions between an initial state and a predetermined folding outcome, offering little tunability after fabrication. Here we introduce a dynamic "living" polymer that continuously remodels its main-chain network through a growth process, enabling post-fabrication control over size, mechanical properties, and geometry. Incorporated as active crease layers, these polymers drive autonomous folding when supplied with "nutrient solutions" containing monomers, crosslinkers and catalysts. The associated dihedral angles are determined by growth kinetics and crease composition. Iterative regrowth reprograms folding pathways and increases mechanical stiffness up to 50 times. We demonstrate rigid (Miura) and non-rigid patterns (square-twist) that can be repeatedly reconfigured. Through this work, we establish a foundation for adaptive structures with unlimited re-programmability, opening avenues for applications in biomedical wearable devices and multifunctional deployable systems.
    Keywords:  fabrication; materials science; polymer; soft matter; soft robotics
    DOI:  https://doi.org/10.1002/adma.74348
  2. ACS Appl Bio Mater. 2026 Aug 28.
      Cell culture platforms benefit from chemical cues that recapitulate key aspects of the native biological environment. However, substantial challenges remain in designing scaffolds that also control the spatial organization of these cues. This is particularly difficult at gel interfaces, where functional groups must be presented within the outermost few nanometers to efficiently direct processes such as cell adhesion and spreading, but where nano- to microscale heterogeneities in synthetic hydrogel structure can obscure intended patterns. Here, we show that highly structured functional molecular layers, covalently transferred to polyacrylamide (PAAm), create hydrogel interfaces with defined surface chemistries, including amine, carboxylate, and zwitterionic groups, that regulate adhesion, proliferation, and differentiation of C2C12 murine myoblasts on hydrogels ranging from 10 to 90 kPa in stiffness. Functionalization with charged headgroup chemistries within this nanometer-thick interfacial layer increases cell density by 2-6-fold and average cell area by 50-100% relative to unfunctionalized PAAm, while increasing the abundance of extended triangular and rectangular cell morphologies by 5-30-fold. Upon differentiation, amine-functionalized 10 kPa surfaces exhibit geometric mean cell densities 24-fold higher than unfunctionalized surfaces, as well as ∼2-fold higher median numbers of nuclei per multinucleate structure.
    Keywords:  C2C12 myoblasts; functionalized hydrogels; nanostructured soft materials; polyacrylamide; self-assembled monolayers; surface patterning
    DOI:  https://doi.org/10.1021/acsabm.6c01548
  3. Adv Mater. 2026 Sep 01. e74812
      Scaling engineered living materials to clinically relevant dimensions is limited by diffusion-dependent depletion of oxygen and nutrients, which rapidly induces metabolic failure. We introduce glycogen as a nutritional nanoparticle that provides cell-mediated, autonomous nutrient release to support long-term survival under extreme metabolic stress. We demonstrate that human mesenchymal stromal cells (hMSCs) survive for weeks in anoxia and serum deprivation when provided extracellular glycogen. Contrary to long-held assumptions, hMSCs secrete glycogen-degrading enzymes, enabling cell-density-controlled extracellular glycogenolysis and sustained release of glucose and metabolic intermediates, positioning glycogen as the first-of-its-kind metabolic battery. This cell-responsive process maintains metabolic activity, limits glycolytic acidosis, and enhances pro-angiogenic signaling. To translate this mechanism into a versatile materials platform, we engineered core-shell dextran-tyramine microcapsules that stably encapsulate glycogen while permitting diffusion of enzymes and degradation products. Integrated into centimeter-scale GelMA constructs, these microcapsules maintained hMSC viability and function for at least 1 month under anoxia. In vivo, glycogen-loaded implants promote deep cellular infiltration, enhanced matrix remodeling, increased M2 macrophage polarization, and orchestrated accelerated vascularization. This work establishes the novel concept of glycogen-based nutritional nanoparticles as metabolic batteries to endow engineered tissues with autonomous self-feeding capacity, enabling scalable and functional living materials for regenerative medicine and related technologies.
    Keywords:  MSC; glucose; polysaccharides; tissue engineering; vascularization
    DOI:  https://doi.org/10.1002/adma.74812
  4. ACS Sens. 2026 Aug 28.
      Engineering transgene expression to respond specifically to intracellular cues holds transformative potential for monitoring cell states and modulating cellular functions. Here we introduce TRADER (Target-induced Transgene Activators via Reprogramming of dCas6-barnase Degrader), a versatile and modular platform that enables transgene activation in response to intracellular molecules at the post-transcriptional level. TRADER leverages a proximity-dependent RNA degrader system, in which a catalytically inactive Cas6 (dCas6) is fused to an engineered RNase, barnase, to suppress exogenous gene expression through targeted mRNA degradation. This repression can be relieved through two distinct mechanisms: (1) incorporating microRNA (miRNA) target sites into the dCas6-barnase transcript allows for endogenous miRNA-mediated downregulation of the degrader, and (2) inserting protease-cleavable linkers enables protease-triggered degrader disassembly, and further engineering a positive-feedback loop achieves signal amplification. As a proof of concept, we demonstrate the utility of TRADER in two applications: selective sensing of intracellular miRNA and ATP levels in target cells using fluorescent proteins, and conditional elimination of tumor cells overexpressing cathepsin B protease (CaBp) through induced expression of a cytotoxic protein. Collectively, TRADER offers a flexible and expandable toolkit for cell-state-specific control of transgene expression, with broad implications for synthetic biology, cell-based diagnostics, and precision therapeutics.
    Keywords:  ATP; RNA degrader reprogram; intracellular molecule sensors; miRNA; protease
    DOI:  https://doi.org/10.1021/acssensors.6c01983
  5. Sci Adv. 2026 Sep 04. 12(36): eaee3256
      Collagen molecules self-assemble into supramolecular fibers within a molecularly crowded, polysaccharide-rich extracellular matrix (ECM) that has fluid-like, viscoelastic properties. Here, we determine that the viscoelasticity of alginate networks regulates the assembly of type I collagen fibers. The viscoelasticity and shear moduli of the alginate network were tuned by the polymer weight percentage and degree of cooperative ionic and covalent norbornene-tetrazine cross-linking. Stepwise shear strain applied to covalently cross-linked hydrogels generated higher stress than in ionic hydrogels. Hydrogels with reduced viscoelasticity also showed reduced water permeability. Second-harmonic generation confocal imaging revealed that decreasing viscoelasticity significantly suppressed collagen fiber self-assembly. Simulations demonstrated mechanical coupling between the hydrogel network and the aggregate size of collagen molecules, which was consistent with experimental results showing impaired rate and magnitude of self-assembly in covalently cross-linked networks. These results provide a framework for understanding how ECM mechanical properties can influence the assembly and organization of fibrillar macromolecules.
    DOI:  https://doi.org/10.1126/sciadv.aee3256
  6. J Am Chem Soc. 2026 08 26. 148(33): 35949-35960
      Synthetic cells are compartments designed to mimic the functions and characteristics of living cells. By constructing synthetic cells from abiotic, basic components (bottom-up), it is possible to investigate the minimal requirements for life and gain insights into fundamental principles of biology. Among the available platforms, complex coacervates are particularly attractive, due to their potential to encapsulate a wide range of biomolecules and other cargo, enabling genotype-phenotype mapping. By coupling coacervate formation to a fueled chemical reaction cycle, the synthetic cells become fuel-dependent, growing in the presence of fuel and decaying in its absence, resembling biological cells. However, constructing cellular substructures for these fuel-dependent synthetic cells, such as cytoskeletons, has remained an unresolved challenge. Here, we show that supramolecular (co)polymers can act as cytoskeletons for the synthetic cells, depending on their condenophilicity (their affinity for the droplet phase). By using two distinct supramolecular building blocks, the condenophilicity can be modulated. Supramolecular copolymers where only some of the monomers bind to the complex coacervate result in the formation of a protruding cytoskeleton in and around the droplet. However, as condenophilicity increases, the polymers partition strongly into the coacervates, leading to the formation of a fully encapsulated cytoskeleton. We found that these internal structures influence the synthetic cell properties, such as morphology and lifespan. Moreover, the synthetic cells can dynamically reconstitute the supramolecular fibers, creating distinct populations within the cells and the surrounding dilute phase. Our results demonstrate that orthogonally assembled structures can serve as cellular substructures for active complex coacervate-based synthetic cells, broadening the existing arsenal of tools to bestow these rudimentary synthetic cells with more life-like properties.
    DOI:  https://doi.org/10.1021/jacs.6c09705
  7. Cell. 2026 Sep 01. pii: S0092-8674(26)00932-3. [Epub ahead of print]
      Transcriptomic profiling is widely applied to characterize cellular gene expression, yet existing approaches lyse cells and preclude direct analysis of transcriptional dynamics in the same sample over time. We addressed this limitation by engineering mammalian cells to "self-report" their transcriptional states via mRNA export in virus-like particles (VLPs). Repeated sampling of culture media from VLP-producing cell populations faithfully captured evolving transcriptional states in complex biological settings, including acute inflammatory stimulation of primary cell spheroids and multi-day differentiation of pluripotent stem cells. We engineered VLP components for multiplexed readouts from distinct cell types in co-culture and for tuning self-reported RNA profiles. Finally, we demonstrated the unique utility of self-reporting for selective longitudinal tracking of endothelial cell dynamics within the enclosed architecture of a microphysiological co-culture system to identify perivascular stroma-dependent temporal gene programs underlying vasculogenesis. Altogether, this work establishes cellular self-reporting as a broadly enabling technology for live-cell transcriptome-wide gene expression profiling.
    Keywords:  RNA; dynamics; live-cell; microphysiological systems; protein engineering; synthetic biology; transcriptomics; vasculogenesis; virus-like particles
    DOI:  https://doi.org/10.1016/j.cell.2026.08.005
  8. Cell. 2026 Sep 01. pii: S0092-8674(26)00936-0. [Epub ahead of print]
      Cells can respond to alterations in the abundances of specific proteins through transcriptional outputs. Synthetic approaches inspired by native post-transcriptional circuits that convert protein abundance changes into programmable gene expression would be transformative. Here, we discover and describe design principles that effectively convert protein degradation into transcriptional outputs in live cells. We define ratiometric transcriptional activation, where control over the ratio between a transcription factor and a protein of interest fused to its inhibitor enables detection of abundance changes with high sensitivity at scale. We show that ratiometric transcriptional activation can be implemented in single cells using triply orthogonal circuits or in multicellular pools, operating independently of the mechanism of protein downregulation and enabling simultaneous detection of multiple protein downregulation events through outputs such as cell survival, fluorescent protein expression, or barcode sequencing. These circuits can be applied to oncogenic targets and enable discovery of new molecular glue degraders.
    Keywords:  CRISPR; PROTAC; amplification; anti-CRISPR; gene circuits; high-throughput; molecular glue; multiplexed circuits; proteostasis detection; synthetic biology; synthetic circuits; targeted protein degradation
    DOI:  https://doi.org/10.1016/j.cell.2026.08.009
  9. Polym Chem. 2026 Aug 26.
      Molecularly imprinted polymers (MIPs) are porous materials generated by templated polymerisation, in which functional and crosslinking monomers are organised around a target molecule and fixed within a polymer network to create high-affinity, selective recognition sites for the chosen analyte. The appeal of MIPs lies in their robustness, low-cost and chemically versatile nature, in addition to directly encoding selective molecular recognition into polymer networks while retaining the thermal, mechanical, and processing advantages of synthetic materials. Yet, despite being discovered a century ago, MIP development remains dominated by empirical, target-by-target optimisation. The field therefore presents a compelling challenge for data science and machine learning: MIP performance emerges from a high-dimensional coupling of material, polymer synthesis and processing parameters but this complex design space is still only sparsely sampled. In this Perspective, we argue that the next step for MIPs is not simply better prediction of pre-polymerisation interactions, which is traditionally used to predict optimal composition. Pre-polymerisation metrics are weak predictors of functional performance once MIPs are synthesized and applied; therefore, a broader shift towards data-driven polymer design which considers manufacturing constraints from the outset is needed. We discuss our future vision for the field and how structured datasets, high-throughput screening, computational modelling, Bayesian optimisation and interpretable machine learning enable the move from empirical recipes towards programmable synthetic receptors. Sensing and sustainable manufacturing routes will be covered, placing particular emphasis routes on exploiting the robustness of MIPs to facilitate high-throughput production and biocompatibility challenges.
    DOI:  https://doi.org/10.1039/d6py00493h
  10. J Mater Chem B. 2026 Aug 30.
      Nerve conduits are commonly used in peripheral nerve repair, but clinically available conduits offer limited functional recovery. While three-dimensional (3D) printing has emerged as a promising technique for nerve conduit fabrication, the fabrication of conduits with both geometrical complexity and biochemical guidance remains challenging. Here, we introduce a multi-material, embedded 3D printing approach to fabricate bilayer nerve conduits capable of sustained drug release. In this approach, bilayer conduits are formed by sequentially extruding two crosslinker-containing inks - a biomaterial ink and a sacrificial ink - into a photocrosslinkable gel precursor support bath. As a demonstration, we fabricated conduits with a gelatin methacryloyl (GelMA)/poly(ethylene glycol) diacrylate (PEGDA)-based outer layer and fibrin-based inner layer. A decoupling of drug delivery and mechanical support is uniquely enabled by the bilayer design, where the outer layer provides mechanical strength and stability, while the inner layer enables the sustained release of nerve growth factor (NGF). The mechanical properties of bilayer conduits with varying diameters were characterized by compressive testing, and drug delivery from bilayer conduits with NGF loaded in the inner layer was quantified using in vitro NGF release and bioactivity assays. Finally, we demonstrated the fabrication of bilayer conduits with branched and multi-lumen geometries, which are challenging to fabricate with existing strategies. Altogether, these results highlight the promise of 3D printed nerve conduits leveraging tunable biomaterials to both physically guide and biochemically promote nerve regeneration.
    DOI:  https://doi.org/10.1039/d6tb01916a
  11. ACS Appl Mater Interfaces. 2026 Aug 31.
      Heme enzymes catalyze key oxidative reactions, yet their use in biotechnology is often limited by high production costs, low stability, and intricate operational conditions. Hemin, the catalytic iron-porphyrin cofactor of heme enzymes, has been explored as an alternative. However, its practical use is limited by its aggregation and deactivation in aqueous media. Here, we report a minimal biomimetic nanozyme based on the stabilization of hemin with bovine serum albumin (BSA) to enable aqueous catalysis and hydrogel formation under mild aqueous conditions. Through alkaline-mediated synthesis, hemin was stabilized with BSA, allowing the generation of a Hemin@BSA noncovalent hybrid with peroxidase- and catalase-like activity, outperforming free hemin or BSA complexed with hemin prepared under physiological conditions. Beyond standard peroxidase assays, Hemin@BSA catalyzed the oxidative C-C coupling of N-acetyl-tyrosine (NAT), yielding dityrosine as the main product. This enzymatic-like property was successfully applied at the macromolecular level, enabling the crosslinking of hyaluronic acid-tyramine (HA-TyrA) conjugates, yielding the formation of hydrogel networks with mechanical properties comparable to HRP-mediated crosslinked hydrogels. The cytotoxicity of hemin and Hemin@BSA was evaluated in both U87 glioblastoma and normal human astrocytes (NHA) cells, while cellular uptake and reactive oxygen species (ROS) generation were investigated in U87 cells, demonstrating efficient cellular uptake of Hemin@BSA and higher ROS levels induced by free hemin compared with Hemin@BSA. Overall, simple heme-protein complexes lie as the interface between molecular catalysts and functional biomaterials. They provide a low-cost and robust alternative to natural peroxidases, making them promising tools for creating redox-based hydrogels towards biomedical applications.
    Keywords:  artificial enzymes; cancer cell interactions; catalase-like activity; dityrosine formation; hemin; peroxidase-like activity; redox-mediated hydrogel formation
    DOI:  https://doi.org/10.1021/acsami.6c10477
  12. Cell. 2026 Sep 01. pii: S0092-8674(26)00934-7. [Epub ahead of print]
      Fluorescent imaging in live cells is a cornerstone of life sciences. While natural fluorescent proteins have been engineered to enhance individual features, no existing tag combines ideal properties into a single system: high brightness, reversible binding, compact size, and stability across diverse conditions. Here, we achieve this through de novo design of rhodamine binders (Rhobin). To harness the broad repertoire of rhodamine fluorophores, we developed a generalizable design strategy for a pan-rhodamine binder compatible with diverse wavelengths and applications. Rhobin enables live- and fixed-cell imaging of various subcellular targets in mammalian cells, showing brightness surpassing existing tags. Its reversible fluorophore binding supports super-resolution stimulated emission depletion (STED) and live-cell single-molecule imaging for extended durations compared with HaloTag. Beyond conventional systems, Rhobin enables live imaging of the extremophile Sulfolobus acidocaldarius at 75°C, previously inaccessible with current tags. Together, these results establish Rhobin as a versatile platform for next-generation imaging and biosensor design.
    Keywords:  de novo protein design; fluorescence microscopy; fluorescent tag; rhodamines; single-molecule imaging; super-resolution imaging; thermophilic microorganisms
    DOI:  https://doi.org/10.1016/j.cell.2026.08.007
  13. Nat Commun. 2026 Jul 30. pii: 9237. [Epub ahead of print]17(1):
      Designing fibrous network materials that are simultaneously high-performance and manufacturable remains a fundamental challenge due to the complex coupling between topology, mechanics, and fabrication constraints. Here, we introduce the Regular Fibrous Network Framework, a manufacturability-informed and physics-consistent artificial intelligence framework that bridges digital topology, mechanical prediction, and physical realization. Within this framework, the Topology-Preserving Network Construction algorithm formalizes Eulerian circuit continuity for single-fiber fabrication and transforms digital topologies into knitting- and three-dimensional-printing-compatible architectures. An automated finite-element-analysis pipeline and a physics-inspired graph neural network accurately capture nonlinear J-type and C-type load-displacement behaviors, while a reinforcement learning module performs inverse design within minutes, achieving approximately 50% higher strength and approximately 20% lower mass compared with initial designs. Extending the framework with QuadriFlow-based surface mapping enables direct projection of optimized two-dimensional networks onto curved three-dimensional geometries. This approach is experimentally validated through stereolithography and fused deposition modeling. By integrating manufacturability constraints, physics-inspired learning, and artificial-intelligence-driven optimization into a unified pipeline, the proposed framework provides a generalizable paradigm for knittable, printable, and programmable fibrous network materials, offering a pathway toward autonomous and high-efficiency design of architected materials across length scales.
    DOI:  https://doi.org/10.1038/s41467-026-76045-x
  14. Nano Lett. 2026 Aug 26. 26(33): 10943-10953
      The protein corona influences the in vivo biodistribution of ionizable lipid nanoparticles (LNPs) in nucleic acid delivery, yet their structural architecture remains poorly defined. Using cryo-transmission electron microscopy, we visualized LNP-protein interactions in their native state. We show that, unlike the discrete "fuzzy" shells observed on hard nanoparticles, LNPs displayed no peripheral protein shell. Instead, controlled incubation and competitive "dual-particle" assays, supported by molecular dynamics simulations, indicate that LNP membranes undergo localized thickening and electron-dense remodeling consistent with lipoprotein integration rather than surface adsorption. Similar features were observed in extracellular vesicles, suggesting that this behavior is shared among lipid-based carriers, and proteomic analysis identified apolipoproteins as the dominant associated proteins. Together, these findings support a model in which the biological identity of LNPs arises through membrane remodeling rather than shell-like adsorption and provide a framework for the rational design of targeted nanomedicines.
    Keywords:  electron microscopy; extracellular vesicles; ionizable lipid nanoparticles; lipoproteins; membrane fusion; nanomedicine; protein corona
    DOI:  https://doi.org/10.1021/acs.nanolett.6c00689
  15. Nat Protoc. 2026 Sep 04.
      The engineering of living cells represents a promising biomedical frontier that enables the design of cells with tailored functionalities for advanced therapeutic applications. Genetic manipulation serves as a primary approach in cell engineering, yet it faces inherent limitations, including the complexity of multigene editing and poor cross-species applicability, which restrict the development of cells with sophisticated functionalities. Therefore, flexible and versatile engineering strategies capable of functionalizing living cells to address diverse therapeutic requirements are highly desirable. Given its pivotal role in mediating cellular interactions, the cell surface is an attractive target for directing cell engineering. The diverse functional groups present in surface biomolecules offer abundant chemical modification sites, making them highly amenable to functionalization. Leveraging this inherent chemical accessibility, we have recently developed a flexible and versatile platform for surface functionalization of living cells through in situ dopamine polymerization that allows us to design personalized living cells with customizable functions by tuning the surface components. Here we provide a detailed protocol describing two distinct methods for bacterial functionalization. The first method uses dopamine polymerization-mediated mono-functionalization to construct mucus-penetrating bacteria that can reinforce intestinal mucosal barrier to prevent colitis. The second method uses dopamine polymerization-mediated dual-functionalization to generate synergy-immunoactivation bacteria that can simultaneously induce anticancer and antiviral immunity to treat cancer and prevent infection. Excluding bacterial culture, preparation of mucus-penetrating bacteria and synergy-immunoactivation bacteria takes ~3 h and 1 h, respectively. We anticipate that this protocol can offer valuable guidance for the engineering of living cells with designable and tailorable functionalities for innovative cell-based therapy.
    DOI:  https://doi.org/10.1038/s41596-026-01422-1
  16. Acc Mater Res. 2026 Aug 28. 7(8): 808-818
      The integration of circular principles into chemical manufacturing is poised to significantly transform the production of plastics. This shift will have impacts across the value chain, including raw material sourcing, recyclability, and cost. In recent years, interest in photopolymer-based additive manufacturing (AM) has grown, driven by the increasing demand for multifunctional 3D printing. Photopolymer printing is widely applied in academia and industry as it provides high resolution and rapid print speeds and allows for the construction of plastic products with complex geometries. Therefore, in addition to the benefits of using energy from light, rather than higher energy thermal curing, to create the printed materials, AM offers the advantages of waste reduction through dematerialization. Among the photopolymer-based AM techniques, digital light processing (DLP) is commonly applied due to its high accuracy and resolution and low capital cost for equipment. While advances in equipment are making production-scale photopolymer printing a reality, resin design is largely embedded in the chemistry of the past. However, the nascent state of this industry presents an opportunity to embed sustainability within its material set as it grows, preventing many of the environmental and human health impacts that are linked with the current use of petrochemically derived plastics. While furthering functionality or performance of the materials produced remains an ongoing target for the field, to enhance its sustainability credentials research is focused on (i) switching from petrochemical to biomass-derived monomer feedstocks and (ii) enhancing material circularity such that resins can be printed, depolymerized, and re-printed in a closed-loop, circular manner. Achieving these milestones requires consideration of resin feedstock sourcing and the design of monomers with dynamic bonds to enable recyclability and reprocessability. To expand the portfolio of biomass-derived photopolymer resins, we, along with others, have explored the use of bio-derived and bio-derivable (i.e., those chemical feedstocks that have the potential to be bio-derived but at present are not) monomers that are easily derivatized and compatible with DLP systems. Typical approaches leverage the reactive functional groups in bio-derived monomer sources to create acrylates or epoxides that enable rapid crosslinking, to achieve high-quality 3D-printed polymers. Our approach has focused on leveraging double bonds that naturally occur in biomass-derived chemicals to reduce the number of reaction steps by promoting polymer formation through direct reaction of that double bond via thiyl radical addition chemistry. This step-growth addition method has enabled us to create materials that can be fully degraded to small molecules, but it has also provided opportunities to leverage double-bond stereochemistry to achieve photosets with tunable mechanical properties. Monomer bio-sourcing, however, only addresses half of the problemthe absence of dynamic chemistry inherently limits the recyclability of the resulting materials, thus leading to what is printed becoming waste. To achieve circular resins, leveraging dynamic covalent chemistry has been key to enabling the fabrication of materials that can be readily recycled and reprocessed. While many approaches require monomers to be added to depolymerized resins in an "open-loop" manner, our approach focuses on disulfide chemistry that can be fully returned to its initial state and then re-printed in a "closed-loop" manner. Ultimately, applying bio-derived monomers, circular resin systems, and eco-friendly manufacturing methods is essential to building a truly sustainable manufacturing ecosystem capable of scaling from the laboratory to production. This Account focuses on the innovations that enable sustainable, high-performance additive manufacturing.
    DOI:  https://doi.org/10.1021/accountsmr.5c00354
  17. Bioinspir Biomim. 2026 Sep 03.
      Bioinspired robotics is progressively moving beyond the imitation of biological forms toward systems that exploit biological functions, integrate living components, and interact with natural environments. This Special Issue captures this evolution through contributions spanning functional biomimetics, biohybrid robotics, environmentally powered systems, collective behaviors, and the ethical implications of integrating living organisms into engineered platforms. These works highlight an emerging transition from nature as a source of design principles toward a deeper integration of biological and environmental processes within robotic systems, outlining new directions for adaptive, sustainable, and responsible robotics.
    Keywords:  Biohybrid robotics; Bioinspired robotics; Biomimetics; Living machines; Sustainable robotics
    DOI:  https://doi.org/10.1088/1748-3190/aea25a
  18. ACS Appl Mater Interfaces. 2026 Aug 28.
      Laser modification of polymer surfaces is critical in many contexts, including self-cleaning materials, microelectronics, and biomedical research. Despite their utility, accessing these modified polymers requires expensive or complex materials and multistep fabrication, masking, and washing processes. Here, we present a simple and direct laser writing method for creating diverse, stable, and highly complex patterns on a polysulfide polymer made by inverse vulcanization. The key innovation is the spatial engineering and patterning of the polymer surface by precise control of the laser irradiation time. The polymer's vitrimer-like S-S bond network preserves complex surface patterns with high fidelity and long-term stability. Motifs such as lines, dots, channels, grids, teardrops, checkerboards, and fish scales were reliably and repeatedly created, highlighting the material's robust and versatile patterning capabilities. Hierarchical patterns could also be achieved by combining nanoscale hot-press templating with laser modification. This patterning versatility allows modulation of hydrophobicity, templated self-assembly of gold particles, and precise micrometer-scale optical structures, including diffraction elements and dynamic optical barcodes, with potential for anti-counterfeiting applications.
    Keywords:  anti-counterfeiting; contact angle; inverse vulcanization; photolithography; structural color
    DOI:  https://doi.org/10.1021/acsami.6c08290
  19. ACS Appl Mater Interfaces. 2026 Aug 26.
      Conventional microfluidic chips fabricated from polydimethylsiloxane (PDMS), glass, and silicon suffer from intrinsically fixed surface wettability, tedious post-modification, and inhomogeneous wetting inside enclosed three-dimensional (3D) microchannels, which severely restrict their applications in biphasic fluid manipulation. Herein, we develop a photocurable poly(vinyl alcohol) (PVA)-based hydrogel featuring a triple synergistic network for digital light processing (DLP) 3D printing of integrated microfluidic devices. Under acidic catalysis, glutaraldehyde (GA) undergoes acetalization with PVA to form the first crosslinked network, which consumes hydrophilic hydroxyl groups and introduces hydrophobic alkyl segments. Subsequently, the hydrogel framework is co-constructed by a PVA hydrogen-bonding physical network and a UV-initiated covalent network derived from acrylamide (AAm), acrylic acid (AAc), and poly(ethylene glycol) diacrylate (PEGDA), ultimately yielding a triple-crosslinked network. By adjusting the GA loading, the water contact angle of the hydrogel can be continuously tuned from 15.42° (hydrophilic) to 111.66° (hydrophobic). Benefiting from the interpenetrating multi-network architecture, the tensile strength increases from 48.76 kPa to 118.27 kPa, and the elastic modulus increases from 14.72 to 63.84 kPa. DLP 3D printing enables the direct fabrication of monolithic microfluidic chips with smooth microchannels down to approximately 160 μm in width, without requiring any post-treatment. Fluorescence characterization confirms that the hydrophilic channels allow stable laminar flow of deionized water, while the hydrophobic channels enable low-friction transport of mineral oil. This work establishes a comprehensive strategy integrating molecular design, wettability programming, and 3D additive manufacturing, providing a scalable platform for applications in fluid transportation, biochemical detection, environmental monitoring, and wearable microfluidics.
    Keywords:  digital light processing 3D printing; fluid transport; microfluidic chip; polyvinyl alcohol hydrogel; wettability programming
    DOI:  https://doi.org/10.1021/acsami.6c13837
  20. ACS Appl Mater Interfaces. 2026 Sep 03.
      Hydrogel-based adsorbents have emerged as versatile materials for environmental remediation and sensing owing to their tunable chemistries, hydrated networks, and compatibility with multifunctional nanomaterials. However, conventional static hydrogels remain constrained by diffusion-limited mass transport, slow adsorption kinetics, and limited integration of pollutant detection with remediation. This review highlights the emerging shift from passive adsorption toward dynamic and actuatable hydrogels as adaptive sense-respond-act material systems capable of accelerated pollutant capture, real-time monitoring, and autonomous regeneration. We first discuss static hydrogel design principles, including polymer composition, nanomaterial incorporation, and structural architectures that govern adsorption capacity, selectivity, kinetics, and reusability. We then examine dynamic hydrogel platforms, including intrinsically stimuli-responsive networks, extrinsically actuated composites, and shape-programmed architectures that actively enhance mass transport and interfacial exposure. Particular emphasis is placed on emerging systems that integrate sensing with decontamination, positioning actuatable hydrogels as adaptive environmental interfaces and soft robotic materials. A comparative discussion of static and dynamic systems evaluates their performance, practical limitations, and translational potential for water remediation, resource recovery, and integrated sensing technologies. Finally, challenges in scalability, stability, and system integration are critically assessed, and future directions are proposed toward autonomous, intelligent hydrogel platforms for next-generation environmental technologies.
    Keywords:  adaptive sensing materials; dynamic hydrogels; soft environmental robotics; stimuli-responsive adsorbents; water purification
    DOI:  https://doi.org/10.1021/acsami.6c12257
  21. ACS Chem Biol. 2026 Aug 24.
      Assigning causal function to post-translational modifications (PTMs) remains a central challenge in molecular biology, as most modification events cannot be readily interrogated in their native cellular context. Here, we present a generalizable chemical biology strategy for investigating the functional consequences of lysine acetylation through programmable induced proximity. By combining modular effector recruitment with chemically controlled proximity, this approach enables systematic elucidation of how enzyme identity shapes acetylation outcomes on target proteins in living cells. Across multiple substrates, including histone H3 and p53, we find that distinct acetyltransferases generate reproducible and target-dependent site-selective acetylation patterns, indicating that effector identity encodes predictable features of modification outcomes. These observations establish a framework for linking enzyme recruitment to site-specific PTM deposition and provide a route to identify candidate functional modification events. Rather than providing a single mechanistic insight, this work introduces a broadly applicable strategy for interrogating causal relationships between proximity-driven enzyme recruitment and protein modification, as demonstrated by the impact of p53 acetylation on downstream transcripts. This platform is readily extensible to additional effectors and targets and enables systematic discovery of functional PTMs in cellular systems.
    DOI:  https://doi.org/10.1021/acschembio.6c00510
  22. Methods Mol Biol. 2026 ;3070 331-347
      Localization of proteins to different cell compartments is a major posttranslational regulatory mechanism that eukaryotic cells have evolved to coordinate protein homeostasis and responses to stimuli. Subcellular fractionation allows the separation of distinct protein populations from cellular compartments such as the cytosol, cytoskeleton, membrane, endoplasmic reticulum, or nucleolus. This fractionation can be followed by mass spectrometry-based proteomics to provide insights into spatiotemporal regulation or cellular protein networks. Here, we describe a high-throughput workflow based on sequential cell lysis, which enables the profiling of subcellular proteome architecture and the detection of changes in protein localization at global and posttranslational levels.
    Keywords:  Cell signalling; Mass spectrometry; Posttranslational regulation; Proteomics; Subcellular fractionation
    DOI:  https://doi.org/10.1007/978-1-0716-5515-3_19
  23. Sci Adv. 2026 Sep 04. 12(36): eaeg7217
      The electrification of thermochemical reactors presents an opportunity to not only decarbonize high-grade heat generation but also to customize heating and heat transfer processes in a manner that facilitates process intensification and enhanced conversion. We present metamaterial reactors that use the high-frequency magnetic induction of axially tailored metamaterial baffles to produce customized axial heating profiles. The baffle consists of a combinatorial sequence of two types of lattices each with distinctive heating properties, and the sequence can be inverse designed around the reaction engineering properties of the reactor to produce temperature profiles tailored for a given reaction, flow condition, and maximum temperature. We use these metamaterial reactors to enhance the temperature uniformity in a set of packed bed flow reactors, each driving the reverse water gas shift reaction under different maximum temperature and flow conditions, demonstrating systematic increases in conversion compared to uniformly heated systems. These concepts encapsulate new opportunities in electrified thermochemical reaction engineering in which electrified powering is codesigned with reaction and heat transfer processes to enhance chemical conversion.
    DOI:  https://doi.org/10.1126/sciadv.aeg7217
  24. Nat Genet. 2026 Sep 02.
      Tumor progression is driven by dynamic interactions between cancer cells and their surrounding microenvironment. Here we integrate high-resolution spatial transcriptomics and evolving lineage-tracing technologies to elucidate how tumor expansion, plasticity and metastasis co-evolve with microenvironmental remodeling in a Kras;Trp53-driven mouse model of lung adenocarcinoma. We find that subclonal expansion contributes to a hypoxic, immunosuppressive and fibrotic microenvironment that is associated with the emergence of prometastatic cancer cell states. We use tumor phylogeography to delineate intercellular interactions that are rewired in the expanding tumor niche and use co-culture systems to dissect how intercellular interactions and hypoxia influence cancer cell state. Furthermore, we find that metastases arise from spatially confined primary tumor subclones and remodel the distant metastatic niche into a fibrotic, collagen-rich microenvironment. Together, we present a comprehensive dataset integrating spatial assays and lineage tracing to elucidate how sequential changes in cancer cell state and microenvironmental structures cooperate to promote tumor progression.
    DOI:  https://doi.org/10.1038/s41588-026-02739-z
  25. Science. 2026 Sep 03. 393(6815): 1014-1020
      Methane pyrolysis (MP) offers a compelling opportunity to meet low-carbon hydrogen demand using existing energy infrastructure. A key limitation in scaling MP is the efficient delivery of high-temperature heat into the reactor. We show that hydrogen-fueled autothermal operation overcomes this limitation, enabling an increase of several orders of magnitude in the reactor throughput for commercially relevant bed diameters. It also yields a carbon coproduct of 96.0% degrees of graphitization, meeting graphite precursor specifications and enabling domestic graphite production from natural gas using low-cost iron oxide catalysts. We further demonstrate a strategy to suppress the direct emissions inherent to autothermal operation, reducing them to near zero. A process-level life cycle assessment estimates that carbon intensities for autothermal methane pyrolysis can be as low as 1.9 to 4.5 kilograms (kg) of CO2,eq per kg H2.
    DOI:  https://doi.org/10.1126/science.aed4911
  26. ACS Biomater Sci Eng. 2026 Sep 04.
      Intervertebral disc (IVD) degeneration is a leading cause of low back pain (LBP), primarily originating in the nucleus pulposus (NP). Regenerative strategies combining mesenchymal stem cells (MSCs) with biomaterials offer great potential for NP repair by replenishing cells and restoring extracellular matrix (ECM). However, key translational challenges remain, including limited stem cell differentiation, poor cell survival in the harsh degenerative niche, and insufficient biomaterial support. While matrix viscoelasticity has been shown to influence adipose-derived stem cell (ASC) discogenic differentiation, its interplay with cell-adhesive ligands for IVD regeneration remains unclear. Moreover, most current hydrogels fail to replicate the ultrafast stress relaxation properties of native non-degenerative human NP tissue. Here, we developed viscoelastic ECM peptide-functionalized hydrogels (VEPH), specifically designed to mimic healthy human NP biomechanics and promote ASC differentiation for NP regeneration. We biochemically conjugated NP ECM-derived adhesive peptides (IKVAV, hA5G26, CHAD) through maleimide-thiol click chemistry, achieving hydrogels with significantly faster stress relaxation (∼25 s) compared to conventional viscoelastic alginate hydrogels (>100 s). Our results demonstrated that VEPH supported >95% ASC viability and robust metabolic activity over 21 days in 3D culture. Notably, the IKVAV-functionalized hydrogel significantly enhanced ASC cell-matrix interactions, upregulated NP marker expression (KRT18, HIF-1α, ITGA3, and CD24), and promoted type-II collagen secretion, indicating an NP-committed cell fate. Our findings highlight the synergistic roles of matrix viscoelasticity and NP-specific biochemical cues in directing ASC discogenic differentiation and advancing novel biomaterial design for IVD regeneration.
    Keywords:  cell-adhesive peptides; cell-matrix interaction; hydrogels; intervertebral disc regeneration; stem cells
    DOI:  https://doi.org/10.1021/acsbiomaterials.5c02074
  27. Metab Eng. 2026 Sep 03. pii: S1096-7176(26)00141-2. [Epub ahead of print] 102546
      Artificial membraneless organelles (MLOs) are emerging as spatial organizers in synthetic biology, yet their applications remain largely confined to post-translational regulation. Here, we engineer synthetic condensates that act as modular hubs for targeted mRNA sequestration, enabling programmable post-transcriptional control in Escherichia coli. By incorporating orthogonal RNA-binding protein-aptamer interaction into the compartment, the designed MLOs can enhance translation through the integration of the translation machinery or repress specific pathways by isolating target transcripts. Tailoring condensate properties allows flexible functional optimization. We demonstrate rescue of bacterial cell division by sequestering a division inhibitor mRNA, and significantly improve the production of lacto-N-tetraose and lacto-N-neotetraose through compartmentalization or suppression of competing metabolic genes. Our work expands the functional repertoire of synthetic MLOs beyond enzyme scaffolding to encompass RNA-centric regulation, offering an adaptable strategy for reprogramming cellular functions in synthetic biology and biomanufacturing.
    Keywords:  Membraneless organelle; Post-transcriptional regulation; RNA compartmentalization; Synthetic biology
    DOI:  https://doi.org/10.1016/j.ymben.2026.102546
  28. Proc Natl Acad Sci U S A. 2026 Sep 08. 123(36): e2605178123
      Protein structure search has been revolutionized by deep learning methods that can rapidly search massive databases. However, current structure search tools often miss proteins related by topological rearrangements, particularly circular permutation, wherein proteins share highly similar structure but differ in the positioning of their termini. We introduce a circular permutation-invariant graph neural network (CIRPIN) that addresses this limitation through a data augmentation strategy using synthetic circular permutations. We demonstrate that CIRPIN learns representations of proteins that are invariant to circular permutation, enabling it to identify structurally similar proteins within the Structural Classification of Proteins and AlphaFold Cluster Representatives databases. Using CIRPIN, we created CIRPIN-DB, a database of 18.3 million protein pairs highly enriched for circular permutation relationships. Our database contains structures from 845 unique topologies in the CATH Protein Structure Classification database representing the largest and most comprehensive resource of proteins related by a circular permutation assembled to date. Notably, among several novel circular permutants, we find that the PDZ domain-the most commonly inserted domain within multidomain proteins-exists in four distinct circularly permuted forms. Our results establish CIRPIN as a powerful tool to investigate the evolutionary mechanisms underlying circularly permuted proteins.
    Keywords:  PDZ domain; circular permutation; protein evolution; structural bioinformatics
    DOI:  https://doi.org/10.1073/pnas.2605178123
  29. Metab Eng. 2026 Aug 31. pii: S1096-7176(26)00135-7. [Epub ahead of print]99 102540
      Hydrogen sulfide (H2S) is a microbiota-derived metabolite in the gastrointestinal tract implicated in a number of diseases. Its volatility and reactivity make experimentally controlling H2S concentration in vivo difficult, limiting our ability to interrogate its dose-dependent effects on host physiology. Engineered bacteria present a compelling solution, yet most probiotic metabolic engineering approaches have focused on in vitro optimization, failing to account for the complex intestinal environment. Here, we engineered Escherichia coli strains to produce or consume H2S in specific intestinal regions by incorporating knowledge of the local metabolic environment and resident microbial activities into the design process. Analysis of human-derived ex vivo cultures revealed that glutathione (GSH) is inefficiently converted to H2S, suggesting GSH as a relatively stable substrate for engineered sulfide production. We thus engineered a GSH-dependent H2S producer, which increased levels 21-fold ex vivo. To target the nutrient-rich, microbially sparse environment of the small intestine, we optimized a H2S producer that uses L-cysteine as a sulfur source, demonstrating a 7-fold increase in H2S levels in mice. Finally, to develop strains capable of sequestering H2S, we leveraged the availability of fumarate and nitrate as electron acceptors in the large intestine by engineering a strain expressing sulfide:quinone oxidoreductase (Sqr). This enables oxidation of H2S to intracellular polysulfides and achieves higher consumption rates than alternative sequestration strategies reliant on resource-intensive GSH production. Together, this work developed engineered microbes as precision tools to modulate H2S levels and showcases a generalizable framework for region-targeted design of engineered probiotics.
    Keywords:  Host-microbe interactions; Hydrogen sulfide; Metabolic engineering
    DOI:  https://doi.org/10.1016/j.ymben.2026.102540
  30. Metab Eng. 2026 Aug 31. pii: S1096-7176(26)00138-2. [Epub ahead of print]99 102543
      Cell death during late-stage culture remains a major limitation in mammalian manufacturing processes for antibody therapeutics, constraining yield and process robustness. Here, we identified the predominant apoptotic signalling axis associated with culture decline in Chinese hamster ovary (CHO) cells and engineering against it. Recombinant CHO lines were engineered to overexpress BCL-2 (intrinsic pathway and benchmark control), CFLAR (death receptor pathway regulator), or TPT1 (a multifunctional stress-response protein). Apoptosis profiling across fed-batch cultures indicated that viability loss is predominantly associated with intrinsic pathway activation, characterised by increased cleavage of caspase-9, caspase-7 and caspase-3, with minimal activation of caspase-8. In batch and fed-batch studies, CFLAR and TPT1 improved late-stage viability and extended culture lifespan relative to the control, with TPT1 providing the most consistent benefit and outperforming BCL-2 in overall process performance. Under apoptosis challenges, including chemical induction, pro-apoptotic BAK overexpression and caspase 3 activation, TPT1-expressing cells maintained higher viability, decreased apoptosis and attenuated caspase 3 activation. Finally, TPT1 overexpression was transferred to industrially relevant CHO DG44 production platforms expressing monoclonal and bispecific antibodies and improved culture longevity and titres in both formats, without altering cell-specific productivity and N-glycan profile. TPT1 also presented similar behaviour to a BAK/BAX double knockout on viability and exceeded it on growth and titre, and combining the two gave no further gain in unfed batch culture. TPT1 overexpression therefore offers a single-cassette route to longer culture and high volumetric output inCHO-based bioprocesses.
    Keywords:  Antibody production; Apoptosis; Applied synthetic biology; Biomanufacturing; Mammalian cells; TPT1
    DOI:  https://doi.org/10.1016/j.ymben.2026.102543