bims-ginsta Biomed News
on Genome instability
Issue of 2026–05–31
forty-one papers selected by
Jinrong Hu, National University of Singapore



  1. Mol Cell. 2026 May 29. pii: S1097-2765(26)00310-2. [Epub ahead of print]
      Nearly all cellular processes are pH dependent. The acidic pH inside the lysosome (vacuole in yeast) is essential for cellular content degradation, signaling, and autophagy. Defects in lysosome/vacuole acidification are a conserved hallmark of aging and age-related diseases. Traditionally, the lysosome/vacuole is thought to import free protons (H⁺) from the surrounding neutral cytosol. Here, we uncovered a conserved lysosome/vacuole acidification mechanism from yeast to human involving lysosomal/vacuolar uptake of H+ pumped out by mitochondrial electron transport chain through mitochondria-lysosomes/vacuoles membrane contacts. Aging/senescence-associated disruption of mitochondria-lysosome/vacuole contacts causes lysosomal/vacuolar de-acidification, which can be reversed by either expressing an engineered linker to connect these two organelles or through an asymmetry-dependent rejuvenation process in daughter cells. Preserving lysosomal acidification in senescent human cells prevents the induction of major senescence-associated secretory phenotype factors and restores autophagic flux. These findings reshape our current understanding of the mechanisms underlying lysosomal/vacuolar (de-)acidification in both young and aged/senescent cells.
    Keywords:  Mito-Vac/Lyso contacts; SASP; aging; autophagy; cellular senescence; mitochondria; proton; vacuolar/lysosomal acidification
    DOI:  https://doi.org/10.1016/j.molcel.2026.05.004
  2. Sci Adv. 2026 May 29. 12(22): eaed6539
      Mitotic centrosomes consist of centrioles surrounded by a proteinaceous matrix that docks and activates γ-tubulin complexes (γTuCs) to nucleate microtubules for spindle assembly. During mitotic entry, phosphorylation at centrosomes remodels CDK5 regulatory subunit associated protein 2 (CDK5RAP2) family matrix proteins to generate γTuC docking sites. We address the mechanism of this conversion using Caenorhabditis elegans SPindle Defective (SPD-5) as a model. We show that SPD-5 contains two regions, phospho-regulated γTuC binding region 1 (PRGB1) and PRGB2, that are each sufficient for polo-like kinase 1 (PLK1) phosphorylation-regulated γTuC binding. We define key phosphosites in each region and uncover autoinhibition mediated by interactions within and between them. PRGB2 is dimeric and requires γTuCs containing the Mozart family microprotein MZT-1 for binding, whereas PRGB1 is monomeric and binds independently of MZT-1. Our results support a model in which PLK1 phosphorylation induces a conformational change that enables MZT-1-dependent PRGB2 engagement, which in turn relieves PRGB1 inhibition. Such a multistep mechanism would ensure robust spindle assembly by restricting microtubule nucleation in space and time.
    DOI:  https://doi.org/10.1126/sciadv.aed6539
  3. Nat Struct Mol Biol. 2026 May 26.
      Minor zygotic genome activation (ZGA) is crucial for early development and totipotency acquisition; however, the regulatory mechanisms controlling minor ZGA gene expression remain elusive. Here, we show that mouse minor ZGA is driven by spatiotemporally dynamic regulation of H3K9 dimethylation (H3K9me2). H3K9me2 levels at the minor ZGA gene loci are reduced at the early two-cell stage and are reestablished by the morula stage. Maternal depletion of the H3K9 demethylases KDM3A and KDM3B leads to increased H3K9me2 levels and impaired minor ZGA at the early two-cell, followed by arrest at the two-cell to four-cell stage. In mouse embryonic stem cells, H3K9 at the minor ZGA loci is dimethylated. Combined loss of the H3K9 methyltransferases G9a and SETDB1 results in the synergistic derepression of minor ZGA genes. Mechanistically, SETDB1 targets the transcriptional factor Dux, while G9a broadly represses minor ZGA genes through H3K9me2 deposition linked to lamina-associated heterochromatin formation. Therefore, H3K9me2 dynamics are unveiled as an important regulator of minor ZGA, highlighting the indispensable role of epigenetic control in early embryogenesis.
    DOI:  https://doi.org/10.1038/s41594-026-01811-w
  4. Mol Cell. 2026 May 29. pii: S1097-2765(26)00288-1. [Epub ahead of print]
      Despite a growing interest in the ribotoxic stress response (RSR), it remains unknown how the upstream p38- and JNK-activating MAP3 kinase ZAKα senses translational impairment. Combining AlphaFold3 prediction and RNA crosslinking and immunoprecipitation (CLIP), we uncover that ZAKα dynamically monitors the mRNA exit channel of elongating ribosomes. This is accomplished by ZAKα via direct interactions with the ribosomal proteins RACK1 and RPS27 as well as 18S rRNA helix-26. In this conformation, the RNA-binding S (sensing) and C-terminal domain of ZAKα span across the mRNA exit channel. Loss of ribosome processivity and mRNA stasis stabilizes the interaction allowing for kinase activation. Prolonged binding of ZAKα to stalled and collided ribosomes is associated with sequestration of the sterile alpha-motif (SAM) domain on RACK1, which allows for transient ZAKα dimerization, activation loop trans-autophosphorylation, and RSR activation. Our findings highlight how ZAKα senses both stalled and collided ribosomes in human cells through overlapping mechanisms.
    Keywords:  ZAK-alpha; ribosome collision; ribosome stalling; ribotoxic stress response; translation surveillance
    DOI:  https://doi.org/10.1016/j.molcel.2026.04.034
  5. Nat Struct Mol Biol. 2026 May 27.
      Replication fork collapse at single-strand DNA breaks threatens genome stability but how such forks are repaired and resolved has remained unclear. Here we replicate site-specific nicks with single or converging replication forks in Xenopus laevis egg extracts. Collapse of a single fork generates a single-ended double-strand break (DSB) that undergoes homologous recombination to yield stable D-loops and end-to-end fusions, yet does not restart DNA synthesis. Single collapsed forks can also undergo extensive nucleolytic degradation, appearing to disassemble the sister fork through 'secondary collapse' events that resolve single-ended DSBs without engaging DSB repair. In contrast, semisynchronous convergent collapse generates a double-ended DSB that is primarily repaired through annealing-dependent DSB repair, completing DNA synthesis but generating precise deletions and templated insertions. These error-prone products are not detected following single-fork collapse. Our findings demonstrate that single and semisynchronous convergent collapsed forks elicit distinct repair outcomes.
    DOI:  https://doi.org/10.1038/s41594-026-01812-9
  6. Cell. 2026 May 29. pii: S0092-8674(26)00507-6. [Epub ahead of print]
      The human meninges are essential regulators of central nervous system (CNS) development and homeostasis. However, a comprehensive spatiotemporal characterization of the cellular and molecular dynamics during human meninges development is currently lacking. Using single-cell spatiotemporal transcriptomics across 6-23 gestational weeks (GWs), we identify asynchronous meningeal layer development, with the pia mater forming earliest. We define layer-specific fibroblast states from the three meningeal layers, including the expression of barrier-related genes, neurotransmitter transporter-related and synapse-related genes, and lipid metabolism-related genes. We further characterize spatiotemporal heterogeneity in meningeal immune cells, identifying a meningeal-specific macrophage population. The pia mater recruits and spatially organizes immune cells, particularly macrophages in the leptomeninges via CXCL12-CXCR4 signaling. Moreover, Trem2+ macrophages, in turn, regulate the development of Cajal-Retzius (CR) cells in the cerebral cortex. These findings establish a spatiotemporal framework for human meningeal development, uncover neuro-immune interactions that shape cortical development, and identify potential therapeutic targets.
    Keywords:  MERFISH; human meningeal development; meningeal angiogenesis; meningeal fibroblasts; meningeal macrophages; neuro-immune interaction; pial fibroblasts; scRNA-seq; scStereo-seq; spatial transcriptomics
    DOI:  https://doi.org/10.1016/j.cell.2026.04.040
  7. J Cell Biol. 2026 Aug 03. pii: e202509170. [Epub ahead of print]225(8):
      Hepatocytes display a unique polarity, forming narrow apical tubes-bile canaliculi (BCs)-between adjacent cells that are essential for liver function. Unlike most epithelial cells, hepatocytes express both E- and N-cadherin, yet their specific roles during BC tubulogenesis remain incompletely understood. Here, we show that these cadherins are collectively required for hepatic polarity and BC formation yet act through distinct mechanisms. E-cadherin localizes to adherens junctions, lateral membranes, and the cleavage furrow, where it promotes division-linked BC elongation and cell-cell contact formation by controlling spindle orientation and RhoA activation via NuMA and ARHGEF17. In contrast, N-cadherin is restricted to adherens junctions and maintains hepatic polarity by attenuating RhoA activity through the p120-catenin family member ARVCF and its partner p190B/ARHGAP5. Together, these findings reveal that dual cadherin expression drives hepatic polarity and BC formation by controlling RhoA activity in a coordinated yet opposing manner.
    DOI:  https://doi.org/10.1083/jcb.202509170
  8. Cell. 2026 May 28. pii: S0092-8674(26)00455-1. [Epub ahead of print]189(11): 3184-3213
      Aging is characterized by the loss of tissue homeostasis, traditionally captured by the hallmarks of aging, yet how these hallmarks integrate to drive organismal decline remains unresolved. We propose mesenchymal drift, a process in which cells progressively lose lineage identity and adopt mesenchymal features, as a convergent framework that integrates the hallmarks of aging. Accumulating evidence suggests that mesenchymal drift can both arise from and reinforce these hallmarks, forming a feedback network that drives systemic decline. Framing aging through mesenchymal drift shifts the focus from discrete molecular defects to interconnected disruptions in cellular identity and cell state regulation, providing a more cohesive view of aging biology. Mesenchymal drift may therefore represent a measurable and targetable mechanism underlying diverse age-related pathologies. Interventions such as partial reprogramming may restrain mesenchymal drift, restore cellular identity, and simultaneously counteract multiple hallmarks, positioning it as both a convergent nexus and a tractable therapeutic axis in aging biology.
    Keywords:  Yamanaka factors; aging; biomarkers; cellular identity and plasticity; endothelial-to-mesenchymal transition; epithelial-to-mesenchymal transition; fibrosis; geroscience; partial reprogramming; rejuvenation
    DOI:  https://doi.org/10.1016/j.cell.2026.04.020
  9. Cell Stem Cell. 2026 May 29. pii: S1934-5909(26)00193-1. [Epub ahead of print]
      Elucidating cell fate decision-making requires linking lineage history to dynamic phenotypic states. Driven by single-cell sequencing and genome engineering, lineage tracing has evolved from observational studies into a multidimensional, high-throughput discipline. Here, we synthesize its three methodological pillars: prospective tracking via genetic markers, high-throughput mapping using synthetic barcodes, and retrospective tracing leveraging endogenous natural variants. We survey their integration with multi-omics and spatial profiling, alongside computational approaches to decode cell fates from lineage data. By detailing each approach's trade-offs, we offer a systematic guide for experimental design and highlight emerging frontiers for translating precision clonal analysis into the clinic.
    Keywords:  barcoding; cell fate; development; diseases; lineage tracing; recombinase; regeneration
    DOI:  https://doi.org/10.1016/j.stem.2026.05.001
  10. Nat Cell Biol. 2026 May 27.
      Mitochondria are central hubs for energy production and cellular adaptation to stress. When mitochondria are damaged, cells activate protective signalling pathways to restore homeostasis and ensure survival. One such pathway, known as the integrated stress response (ISR), reduces overall protein synthesis while enhancing the production of stress-responsive proteins. The mitochondrial carriers SLC25A12 and SLC25A13 transport similar metabolites but are expressed in different tissues and linked to distinct genetic diseases. Here we show that SLC25A12 plays a previously unrecognized role in stress signalling that is independent of its transport activity. SLC25A12 interacts with the mitochondrial protease OMA1, enabling activation of ISR during mitochondrial damage. This signalling function is disrupted by a disease-linked mutation but preserved in transport-deficient variants. Our findings reveal SLC25A12 as a dual-function mitochondrial protein, acting as both a metabolite transporter and a regulator of stress signalling, and suggest that defective ISR activation may contribute to certain SLC25A12-associated pathologies.
    DOI:  https://doi.org/10.1038/s41556-026-01973-1
  11. Redox Biol. 2026 May 18. pii: S2213-2317(26)00224-7. [Epub ahead of print]94 104226
      Metabolic reprogramming is a hallmark of myocardial infarction (MI), in which cardiomyocytes shift from fatty acid oxidation to anaerobic glycolysis, leading to elevated lactate production and mitochondrial dysfunction. Lactylation, a recently discovered lysine post-translational modification, has emerged as a metabolic signaling mechanism; however, its role within mitochondria during MI remains poorly understood. Here, we mapped the mitochondrial lactylome following MI and examine how modulation of lactate transport influences mitochondrial metabolism and redox homeostasis. Using quantitative proteomics, we identify extensive remodeling of mitochondrial protein lactylation after MI, affecting enzymes involved in bioenergetics, redox regulation, and metabolic control. Pharmacological inhibition of monocarboxylate transporter-1 (MCT1) using AZD3965 further reshapes the mitochondrial lactylome, increasing lactylation of specific metabolic and redox-associated proteins without uniformly exacerbating mitochondrial dysfunction. Despite sustained impairment of global cardiac function, MCT1 inhibition attenuates post-MI fibrosis and inflammation and partially restores mitochondrial respiratory capacity. Consistent with in vivo findings, genetic or pharmacological inhibition of MCT1 in hypoxic cardiomyocyte-derived cells reduces mitochondrial reactive oxygen species, decreases inhibitory pyruvate dehydrogenase phosphorylation, and improves mitochondrial bioenergetics. Together, these findings reveal that mitochondrial lactylation is a context-dependent regulator of mitochondrial metabolism and redox balance following MI. Rather than acting solely as a pathological modification, lactylation integrates lactate availability with mitochondrial function to influence inflammatory and fibrotic remodeling, highlighting mitochondrial metabolic plasticity as a potential therapeutic target in ischemic heart disease.
    Keywords:  AZD3965; Lactate; Lactylation; MCT1; Mitochondria; Myocardial infarction
    DOI:  https://doi.org/10.1016/j.redox.2026.104226
  12. Nat Commun. 2026 May 26.
      Organ function depends on communication among cell types to coordinate tissue growth and repair. Although fibroblasts are critical to this process, their role in regulating inflammatory responses to injury remain ambiguous. Here, we show that transforming growth factor β-activated kinase 1 (TAK1) is a gatekeeper of an inflammatory cardiac fibroblast phenotype. In cardiac fibroblasts, TAK1 signaling controls the acquisition of defining features of inflammatory fibroblasts, including chemokine and cytokine synthesis, lipid mediator production, metalloproteinase activity, and damage-associated molecular pattern recognition. Moreover, TAK1 propagates IL-1β and TNF-α signaling, but not TGF-β-SMAD signaling, regulating inflammatory programs by increasing chemokine secretion while decreasing lipid mediator production. Fibroblast-specific TAK1 deletion decreases neutrophil chemotaxis in vitro and immune cell recruitment after myocardial infarction in vivo, which is associated with improved cardiac remodeling and function in male mice. These results further resolve the nature and function of inflammatory fibroblasts in cardiac responses to injury and identify TAK1 signaling as a critical mediator.
    DOI:  https://doi.org/10.1038/s41467-026-73646-4
  13. bioRxiv. 2026 May 15. pii: 2026.05.14.722739. [Epub ahead of print]
      Compact myelin enables rapid and precise impulse conduction in the vertebrate nervous system. During CNS development, oligodendrocytes wrap spirally around axons while compacting membranes, yet how cytoskeletal remodeling is coupled to these events remains unclear. Actin disassembly is required for wrapping, but whether wrapping is driven by iterative actin-based protrusion or follows a transition to actin-independent mechanisms is unresolved. Here we integrate tract-resolved developmental profiling, live-cell compaction mapping, and in vivo genetic perturbation to define how actin disassembly is coupled to myelin wrapping. We find that actin filaments undergo pronounced, sustained disassembly before active wrapping begins, with little evidence for persistent actin within sheaths during wrapping. We develop a live-cell assay that maps membrane compaction in cultured oligodendrocytes and show that compaction zones are depleted of actin filaments and expand when actin disassembly is promoted. Consistent with this model, oligodendrocyte-specific actin disassembly in vivo accelerates the appearance of thicker myelin early in development. Together, our results support a model in which actin disassembly promotes myelin wrapping by enabling membrane compaction, and provide a platform to dissect how compaction is regulated in development and disease.
    DOI:  https://doi.org/10.64898/2026.05.14.722739
  14. Cell Rep. 2026 May 26. pii: S2211-1247(26)00444-4. [Epub ahead of print]45(6): 117366
      Cell division in plants often follows the shortest path, producing two equal daughter cells. However, some developmental contexts deviate from this rule. The early stomatal lineage in dicots consists of a series of asymmetric divisions. Identification of polarized proteins has improved our understanding of how these divisions are guided, yet the factors determining the orientation of the final symmetric division remain unclear. Here, we use a system in which every cell adopts a stomatal fate to reveal their alignment. Time-lapse imaging on both sides of cotyledons reveals differences in growth dynamics and allows us to compare the stomatal orientation relative to the organ axis, the cell major axis, and the principal directions of growth. Finite element modeling identifies differential growth-derived stress patterns as a potential factor coordinating stomatal division at the organ scale. Stomatal divisions preferentially align with cell geometry, while mechanical perturbations reveal that stress can influence their orientation.
    Keywords:  CP: developmental biology; CP: plants; division orientation; epidermal patterning; mechanical stress; stomata
    DOI:  https://doi.org/10.1016/j.celrep.2026.117366
  15. Cell Stem Cell. 2026 May 26. pii: S1934-5909(26)00163-3. [Epub ahead of print]
      Neointimal hyperplasia, a key pathological feature of many cardiovascular diseases, is driven by vascular smooth muscle cells (SMCs), yet the role of specific SMC subtypes remains unclear. This study identifies a smooth muscle-derived transient progenitor cell (STPC) population, marked by CD34 expression, which emerges after artery injury. These STPCs exhibit high proliferative capacity and generate the majority of neointimal SMCs. Genetic ablation of STPCs significantly reduces neointimal SMC accumulation and attenuates hyperplasia. Mechanistically, SMC-specific knockdown of DCLK1 markedly suppresses STPC generation and mitigates pathological remodeling. These findings establish STPCs as a critical progenitor population responsible for neointimal hyperplasia, identifying them as a novel therapeutic target for vascular diseases.
    Keywords:  CD34; DCLK1; STPCs; dual recombinases; lineage tracing; neointimal hyperplasia; smooth muscle-derived transient progenitor cells; vascular smooth muscle cells
    DOI:  https://doi.org/10.1016/j.stem.2026.04.023
  16. bioRxiv. 2026 May 13. pii: 2026.05.12.724683. [Epub ahead of print]
      Adhesion G Protein-Coupled Receptors (aGPCRs) transduce mechanical stimuli across the cytoplasmic membrane in eukaryotes. These receptors contain extracellular G PCR A utoproteolysis IN ducing (GAIN) domains that undergo autoproteolysis but maintain stable association of their cleavage products. A diverse set of adhesion domains appended to the GAIN domain bind surface ligands on neighboring cells or the extracellular matrix. Shear force is thought to disrupt the interaction between the cleavage products exposing a tethered agonist that triggers GPCR signaling. Here, we report that GAIN domains are broadly conserved among bacteria and archaea. The microbial domains lack strong sequence conservation to their eukaryotic counterparts, but are predicted to adopt a similar fold. We demonstrate that these M icrobial A utoproteolysis IN ducing (MAIN) domains undergo autoproteolysis both in vitro and in vivo, using conserved catalytic residues. Furthermore, proteolysis occurs in a conserved β-turn that allows stable non-covalent interactions between the cleavage products. MAIN domains are tethered to the cell envelope of bacteria and archaea and are fused to diverse sets of adhesion and enzymatic domains. Many of the same adhesion domains are appended to both MAIN and GAIN domains, suggesting these protein families share a common origin and function. We propose that MAIN domains allow microbes to release proteins from their cell surface in response to shear force, enabling broader nutrient scavenging, intoxication of neighboring cells, and dispersal through surface detachment.
    DOI:  https://doi.org/10.64898/2026.05.12.724683
  17. Nat Commun. 2026 May 27.
      Coordinated initiation of DNA replication is essential to ensure efficient and timely DNA synthesis. Yet the molecular determinants that confer origin selectivity in mammalian cells remain incompletely defined. Herein, we present data demonstrating a pivotal role for RNAs transcribed in the proximity of actively replicating gene loci. We show that RNAs aNChoring ORC1 (ANCORs) to the histone variant H2A.Z facilitate origin firing during DNA replication. This ANCOR-H2A.Z interaction appears to be essential for cells to duplicate their genetic material. Widespread and locus-specific perturbations of these transcripts correlate with anomalous replication patterns and a notable loss of the H2A.Z replicative marker at the origin site. Collectively, we present a previously undescribed RNA-mediated mechanism that is associated with the generation of active replication origins in mammalian cells. Our findings delineate a strategy to modulate the origins of replication in human cells at a local and global level, with potentially broad biomedical implications.
    DOI:  https://doi.org/10.1038/s41467-026-73478-2
  18. Nat Commun. 2026 May 26.
      Bmps and Wnts often act antagonistically. Here we report that in mouse digit progenitors, unlike long bone joints, they cooperate to promote chondrogenic over joint (interzone) commitment. Elevated Bmp signaling prevents 5'HoxdΔ/Δ digit progenitors from forming interzones, causing joint loss. We show that constitutive βCatenin activation (βCatCA) in 5'HoxdΔ/Δ interdigits restores digit joints indirectly and cell non-autonomously. RNA profiling reveals βCatCA induces secreted Wnt antagonists that restore 5'HoxdΔ/Δ digit joints by reducing digit-tip Bmp activity. Deleting the βCatCA-induced Wnt antagonist Dkk2 in 5'HoxdΔ/Δ interdigits abolishes joint rescue by βCatCA. Wnts inhibit Gsk3β kinase, which phosphorylates and destabilizes both βCatenin and Bmp-activated receptors pSmad1/5. In cultured limb buds, Gsk3β antagonists stabilize pSmad1/5, enhancing digit-tip Bmp activity. We propose that Wnt antagonists prevent precocious pSmad1/5 accumulation by stabilizing Gsk3β, favoring joint fate. Excess Bmp-pSmad1/5 activity in 5'HoxdΔ/Δ digit-tips accelerates chondrogenic commitment, impeding a switch to joint fate. Wnt antagonists maintain mesenchymal plasticity for normal phalanx-joint specification by slowing the pace of chondrogenic commitment.
    DOI:  https://doi.org/10.1038/s41467-026-73549-4
  19. Nat Cell Biol. 2026 May 25.
      Haematopoietic stem cells (HSCs) display extensive molecular and functional heterogeneity. However, a cohesive model that explains the relationship and biological relevance of these diverse HSC states remains elusive. Here, by performing single-cell transplantations of over 1,000 highly purified murine long-term HSCs combined with in-depth phenotyping of their clonal progeny, we define kinetics-based reconstitution parameters which aligned HSCs into a single hierarchical trajectory reflective of functional potency. This approach revealed that previously identified lineage biases are actually transitory states along this linear trajectory, not a discrete stable condition. Single-cell secondary transplantations validated hierarchical ordering based on reconstitution kinetics, whereas mathematical modelling combined with experimental modulation of lineage-biased blood production revealed that apparent lineage-biased outputs actually arise from cell-extrinsic feedback regulation and clonal competition between slow- and fast-engrafting clones to fill mature lineages to their compartment size limit. This study reconciles multiple layers of HSC heterogeneity into a unifying framework.
    DOI:  https://doi.org/10.1038/s41556-026-01958-0
  20. Cell. 2026 May 27. pii: S0092-8674(26)00523-4. [Epub ahead of print]
      Recognition of Wnt proteins by Frizzled (Fzd) receptors and the low-density lipoprotein receptor-related protein 5/6 (LRP5/6) co-receptor is essential for canonical Wnt signaling. It remains enigmatic how Wnt simultaneously interacts with Fzd and LRP5/6 and activates intracellular Wnt/β-catenin signaling. Here, we report cryo-electron microscopy (cryo-EM) structures of Wnt3a/Fzd8/LRP6 extracellular complexes captured in a 2:4:2 stoichiometry, consisting of a Wnt3a-Wnt3a homodimer, whereby each Wnt3a monomer binds to two Fzd8 receptors and one LRP6 co-receptor. This implies that Wnt3a induces Fzd cystine-rich domain (Fzd-CRD) tetramerization, which in turn could promote recruitment of oligomeric Disheveled (Dvl) to Fzd on the cytoplasmic side. Indeed, mutations of key Wnt3a-Wnt3a interface residues abolish Fzd-LRP clustering and downstream signaling, supporting a critical role of Wnt3a-Wnt3a dimerization in Wnt signalosome assembly and signaling. Our structures also show how the Wnt3a N-helical domain recognizes the LRP6 extracellular domain (LRP6-ECD) E3 β-propeller, while the Wnt3a N-C hairpin interacts with the valley between LRP6-E3 and -E4 propellers, underpinning the development of targeted Wnt therapeutics.
    Keywords:  Frizzled; LRP6; Wnt signalosome; Wnt3a; embryonic development; organoid culture; receptor clustering; regeneration; tissue homeostasis; tumorigenesis
    DOI:  https://doi.org/10.1016/j.cell.2026.05.006
  21. Nat Cell Biol. 2026 May 28.
      Cellular senescence plays key roles in tissue repair, tumour suppression and ageing. Here we identify a rapid, transcription‑independent senescence response in skin following injury. Within minutes to hours after wounding, skin cells at the edge of injury display hallmark features of senescence. This response involves the utilization of pre‑existing Cdkn1a mRNA through the removal of nuclear export inhibitors, which enables Cdkn1a transcript translation and rapid p21 protein accumulation. These cells enter stable cell‑cycle arrest and secrete pro‑migratory and pro‑inflammatory factors that promote tissue repair, including re‑epithelialization. Experimental suppression of this rapid senescence, either genetically or pharmacologically, markedly delays wound closure, whereas inhibition during later phases of repair has no effect. Our findings establish rapid‑onset senescence as a mechanistic requirement for efficient tissue regeneration.
    DOI:  https://doi.org/10.1038/s41556-026-01948-2
  22. Cell Metab. 2026 May 27. pii: S1550-4131(26)00185-3. [Epub ahead of print]
      Colorectal cancer (CRC) cells are addicted to iron, which fuels nucleotide synthesis, mitochondrial respiration, and proliferation. Yet paradoxically, high intracellular iron is cytotoxic to most cells, raising the question of how CRC cells tolerate and exploit iron-rich environments. Ferroptosis, an iron-dependent form of cell death, is thought to mediate iron toxicity. However, whether most ferroptosis regulators, identified through synthetic chemical screens or small molecule activators, play a role in modulating iron toxicity, particularly in vivo, remains unclear. Here, using multi-omics profiling, CRISPR screening, and in vivo models, we uncover a heme-succinate dehydrogenase (SDH)-coenzyme Q (CoQ) axis that enables CRC cells to buffer iron-induced oxidative stress. Heme-dependent SDH reduces CoQ, which redistributes to mitochondrial and plasma membranes to detoxify lipid reactive oxygen species (ROS) as a radical-trapping antioxidant. These findings reveal that CRCs co-opt metabolic cofactors both for growth and for survival under physiologically toxic iron levels, uncovering new vulnerabilities for therapy.
    Keywords:  colorectal cancer; iron toxicity; mitochondrial antioxidant; oxidative stress
    DOI:  https://doi.org/10.1016/j.cmet.2026.04.020
  23. Mol Cell. 2026 May 26. pii: S1097-2765(26)00307-2. [Epub ahead of print]
      Receptor-type E3 ubiquitin ligases enable extracellular signals to control ubiquitylation in the cytoplasm, playing widespread roles in development, metabolism, and immunity. Using cryoelectron microscopy, integrated with biophysical and functional studies, we visualized a human E3 complex composed of two transmembrane proteins, MEGF8 and MOSMO, and the intracellular RING-family protein MGRN1. This MEGF8-MOSMO-MGRN1 (MMM) complex attenuates Hedgehog signaling by ubiquitylating Smoothened (SMO), a G-protein-coupled receptor (GPCR) that transduces morphogen signals. A long helix in the MMM complex engages SMO using an intramembrane degron and extends into the cytoplasm to suspend an activated and precisely oriented RING domain below the plasma membrane. This architecture enables ubiquitylation of the cytoplasmic surface of SMO, reducing SMO abundance at primary cilia. Our structure provides insights into MEGF8 mutations, which cause multi-organ birth defects, and defines a paradigm for how transmembrane E3 ligases control the cell surface abundance of GPCRs and other signaling receptors.
    Keywords:  E3 ligase; GPCR; Hedgehog signaling; Smoothened; birth defects; cryoelectron microscopy; morphogens; primary cilia; transmembrane receptor; ubiquitylation
    DOI:  https://doi.org/10.1016/j.molcel.2026.05.001
  24. Nat Commun. 2026 05 26. pii: 4595. [Epub ahead of print]17(1):
      Genetic disorders impacting vision affect millions of individuals worldwide, including age-related macular degeneration (common) and inherited retinal disorders (rare). There is an incomplete understanding of the impact of genetic variation on gene expression in the human retina and its role in genetic disorders. Through the generation of whole genome sequencing and bulk RNA-sequencing of neurosensory retina and retinal pigment epithelium from 201 post-mortem eyes, we uncover common and rare genomic variants shaping retinal expression profiles. This includes 1,483,595 significant cis-expression quantitative trait loci impacting 9,959 and 3,699 genes in neurosensory retina and retinal pigment epithelium, respectively, with associated genomic variants enriched to cis-candidate regulatory elements and notable shared eGenes between both tissues. We also detect 1051 expression outliers and prioritise 299 rare non-coding single-nucleotide, structural variants or copy number variants as plausible drivers for 28% of outlier events. This study increases understanding of gene expression regulation in the human retina.
    DOI:  https://doi.org/10.1038/s41467-026-72979-4
  25. Circulation. 2026 May 28.
       BACKGROUND: Cardiac sarcoidosis (CS) is an enigmatic disorder characterized by unexplained patchy, sterile granulomas intermixed with preserved myocardium and fibrotic regions without granuloma. CS causes arrhythmias, sudden cardiac death, and heart failure. The mechanisms producing this remarkable histopathology and disease progression remain unexplained.
    METHODS: Using comprehensive single-cell and spatial transcriptomic analyses, we characterized the cellular composition and gene expression in preserved, granulomatous, and fibrotic regions of human CS hearts. From unexpectedly identified clonally expanded cardiac B cells with rearranged immunoglobulin sequences, we reconstructed antibodies and screened libraries comprising the human peptidome or microbial and allergen peptides to define reactive epitopes in CS hearts.
    RESULTS: Cellular composition and gene expression differed substantially in CS tissues with preserved, granulomatous, or fibrotic histopathology. Cardiomyocytes upregulated arrhythmogenic and inflammasome transcripts associated with pyroptosis. Cardiomyocytes and fibroblasts activated chemoattractant cytokines that sustained myeloid and lymphoid infiltration. Granulomas contained abundant macrophages expressing modulators of cell-cell fusion, along with Th17-skewed T cells that upregulated B-cell-activating factor, thereby promoting antibody production. Fibrotic regions, without active granulomas, exhibited tertiary lymphoid structures, with clonal expansion of mature B and plasma cells. Reconstructed antibodies derived from expanded B-cell clones were inert to microbial and allergen peptides, but reacted to PPL (periplakin), a desmosome protein, and other peptides expressed on cardiac cells.
    CONCLUSIONS: Progressive inflammatory signals in CS are mediated by chemoattractant genes in cardiomyocytes and fibroblasts within preserved myocardium, cell-cell fusion modulators in activated macrophages within granulomatous regions, and tertiary lymphoid structures in fibrotic regions that produce patient-specific autoimmune antibodies. Identification of PPL as a CS autoantigen may account for shared clinical manifestations in CS and arrhythmic desmosomal cardiomyopathies. CS autoantigens may underlie enigmatic histopathologic findings, perpetuate disease, and contribute to adverse outcomes. Uncovering an intracardiac humoral autoimmune axis in CS provides specific therapeutic opportunities to limit granuloma formation and B-cell activation, which may reduce arrhythmogenicity and progressive dysfunction. Parallel analytic strategies have potential to define autoantigens in other enigmatic cardiac immune disorders.
    Keywords:  autoantibodies; cardiomyopathies; inflammation; sarcoidosis; sequence analysis, RNA; spatial transcriptomics
    DOI:  https://doi.org/10.1161/CIRCULATIONAHA.126.079304
  26. Nat Commun. 2026 May 25.
      Epithelial tubulogenesis shapes organs by transforming unpolarized epithelial cords into hollow tubes with central lumens. Posterior neural tube formation during secondary neurulation requires tightly coordinated membrane remodeling for de novo lumen formation and resolution, yet the role of autophagy in this process remains unclear. Autophagy operates through canonical and noncanonical pathways. While canonical autophagy is primarily degradative, the V-ATPase/ATG16L1-dependent Conjugation of ATG8 to Single Membranes (CASM) regulates LC3 lipidation on endocytic compartments. Using human neural tube organoids, MDCK cysts, and epithelial tube micropatterns selectively deficient in canonical or noncanonical autophagy, we demonstrate that CASM is essential for epithelial lumen resolution. Mechanistically, the V-ATPase/ATG16L1 axis coordinates junctional remodeling, phosphoinositide transitions, and Rab-dependent endocytic and recycling pathways to ensure single-lumen formation. These findings identify noncanonical autophagy as a spatially restricted membrane-remodeling mechanism that governs epithelial morphogenesis and reveal distinct, hierarchically balanced contributions of autophagy pathways during development.
    DOI:  https://doi.org/10.1038/s41467-026-73471-9
  27. Nature. 2026 May 27.
      Water molecules, as solvents for biomolecules, are essential to cells. The water potential of the cell decreases under water-deficient conditions1,2, yet how cells sense changes in water potential remains unknown. Here we identify a sterile alpha motif (SAM)-containing protein, SAM8, that undergoes water-potential-dependent condensation both in vivo and in vitro and is crucial for hyperosmotic stress tolerance and seed germination. We use biophysical techniques, in vitro reconstitution and bioimaging to demonstrate that SAM8 is strongly hydrated under normal water conditions, preventing its macroscopic condensation. A negatively charged patch determines SAM8 hydration by creating an electric field and micropolar environment. Water-deficient conditions weaken this hydration, thereby activating SAM8 condensation by reprogramming hydrogen bond, electrostatic and hydrophobic interactions. Furthermore, we demonstrate that SAM8 condensates selectively sequester RNA export factors, leading to nuclear retention of mRNAs and translational reprogramming under hyperosmotic stress. Our findings show a mechanism by which plant cells directly sense and respond to water status, shedding light on how they adapt to water deficit conditions.
    DOI:  https://doi.org/10.1038/s41586-026-10591-8
  28. Nature. 2026 May 27.
      The comprehensive spatiotemporal atlas of gene expression during early human embryonic development is critical for insights into embryogenesis1, organogenesis2 and disease origins3,4. Here, leveraging Stereo-seq technology, we generated spatial transcriptomic profiles across 77 sagittal sections of 13 whole-human embryos ranging from Carnegie stage 12 to 23, integrated with single-nucleus RNA sequencing to elucidate gene expression patterns within defined cellular contexts, revealing the cellular heterogeneity that drives organ-specific differentiation. Our study has established a regulatory profile for the development of 50 organs and 198 substructures, and identified potential tissue-identity regulators. Of note, it uncovered previously uncharacterized gene functions in cardiac and brain development. The atlas not only substantiates and refines the current understanding of human organ development but also highlights key organs susceptible to genetic disorders. Furthermore, we characterized the allelic gene expression within specific organs at different developmental stages. This work presents a comprehensive compilation of genome-wide gene expression profiles for each spatially defined cell population, which can be visualized as a spatial display of the embryonic transcriptional landscape. These results offer the most thorough delineation to data of the spatiotemporal transcriptomic dynamics of human organogenesis.
    DOI:  https://doi.org/10.1038/s41586-026-10545-0
  29. Nat Cell Biol. 2026 May 26.
      Numerous metabolic enzymes translocate from the endoplasmic reticulum (ER) membrane bilayer to the lipid droplet (LD) monolayer, where they perform essential functions. Mislocalization of certain LD-targeted membrane proteins, including HSD17B13 and PNPLA3, is implicated in metabolic dysfunction-associated steatotic liver disease. However, the mechanisms governing the trafficking and accumulation of ER proteins on LDs remain poorly understood. Here using minimal fluorescence photon fluxes nanoscopy and highly inclined and laminated optical single-molecule tracking combined with machine learning, we show that HSD17B13, GPAT4 and the model cargo 'LiveDrop' diffuse at comparable speeds in the ER and on LDs, but become nano-confined upon reaching the LD surface. Mechanistic dissection of LiveDrop targeting revealed that this confinement, along with protein accumulation on LDs, depends on specific residues within its targeting motif. These residues mediate preferential interactions with nanoscale membrane domains, suggesting that LD-targeted proteins selectively partition into distinct lipid-protein environments that transiently alter local motion and concentrate them at the LD surface. Single-molecule trajectories further revealed bidirectional trafficking of LiveDrop across seipin-containing ER-LD bridges, providing direct evidence for lateral protein transfer across membrane contact sites. These findings establish nanodomain-based confinement as a key mechanism driving selective protein accumulation on LDs and reveal how membrane bridges between organelles facilitate protein sorting.
    DOI:  https://doi.org/10.1038/s41556-026-01963-3
  30. Mol Cell. 2026 May 25. pii: S1097-2765(26)00284-4. [Epub ahead of print]
      Endogenous double-stranded RNAs (dsRNAs) are immunogenic self-molecules that drive aberrant immune activation under pathological conditions. Here, we show that dsRNAs and their regulation by RNA-binding proteins are key determinants of the fine balance between aging and immunity in Caenorhabditis elegans and cultured human cells. We find elevated levels of dsRNAs with organismal aging and cellular senescence. We identify a moonlighting function for phenylalanyl-tRNA synthetase, FARS-1/FARSA, as a key factor necessary and sufficient for extending lifespan by downregulating dsRNAs, in particular, mitochondrial dsRNAs. FARS-1/FARSA possesses a previously unrecognized dsRNA-binding domain and mediates dsRNA downregulation with the RNA helicase, RHA-2/DHX37, independently of its canonical role in translation. Notably, increased dsRNA expression resulting from genetic inhibition of fars-1/FARSA upregulates immune response-related genes and enhances innate immunity against pathogens. Our study establishes that FARS-1/FARSA is an evolutionarily conserved dsRNA-binding protein that delays aging and promotes longevity by suppressing dsRNA accumulation.
    Keywords:  Caenorhabditis elegans; FARS-1/FARSA; RNA-binding protein; double-stranded RNA; immunity; longevity; mitochondria; senescence
    DOI:  https://doi.org/10.1016/j.molcel.2026.04.030
  31. Cell Syst. 2026 May 26. pii: S2405-4712(26)00095-5. [Epub ahead of print] 101613
      Biomolecular condensates are membraneless compartments that organize biochemical processes in cells. In contrast to well-understood mechanisms describing how condensates form and dissolve, the principles underlying condensate patterning-including their size, number, and spacing in the cell-remain largely unknown. We hypothesized that RNA, a key regulator of condensate formation and dissolution, influences condensate patterning. Using nucleolar fibrillar centers (FCs) as a model condensate, we found that inhibiting ribosomal RNA synthesis significantly alters the patterning of FCs. Physical theory and experimental observations support a model whereby active RNA synthesis generates a non-equilibrium state that arrests condensate coarsening and thus contributes to condensate patterning. Altering FC condensate patterning by expression of the FC component treacle ribosome biogenesis factor 1 (TCOF1) impairs ribosomal RNA processing, linking condensate patterning to biological function. These results reveal how non-equilibrium states driven by active chemical processes regulate condensate patterning, which is important for cellular biochemistry and function.
    Keywords:  biomolecular condensates; non-equilibrium regulation; nucleolus; patterning; phase separation; transcription
    DOI:  https://doi.org/10.1016/j.cels.2026.101613
  32. Nature. 2026 May 27.
      β-Arrestins 1 and 2 are multifunctional adaptor proteins1 that regulate the signalling of G-protein-coupled receptors (GPCRs), the largest class of receptors, which impact nearly all aspects of physiology and are one of the most common drug targets2. Although β-arrestins interact with a wide array of signalling effectors at many GPCRs, it is unclear how β-arrestins promote such varied functions. Here we show that β-arrestins undergo liquid-liquid phase separation, forming condensates that regulate GPCR function. We show that condensation is specific to visual arrestins and β-arrestins, and demonstrate that β-arrestin oligomerization occurs in proximity to the GPCR to regulate GPCR functions such as internalization and signalling. Our work provides a paradigm for β-arrestin condensates as regulators of GPCR function, with liquid-liquid phase separation serving as an important promoter of signalling compartmentalization at GPCRs.
    DOI:  https://doi.org/10.1038/s41586-026-10539-y
  33. Sci Adv. 2026 May 29. 12(22): eaed5255
      Aged skeletal muscle has a diminished capacity to recover after disuse. Although muscle regrowth requires coordinated interactions between immune and progenitor cells, the mechanisms of impaired remodeling in aged skeletal muscle remain poorly understood yet possibly involve the accumulation of senescent cells. We used a flow cytometry approach coupled with scRNAseq to determine the muscle senescent cell identity and transcriptional landscape during skeletal muscle recovery following disuse atrophy. Young and aged mice underwent 14 days of hindlimb unloading followed by reloading (7 or 14 days). At recovery, old mice showed smaller myofibers and abnormal muscle macrophage dynamics corresponding to greater collagen content. These outcomes coincided with elevated markers of muscle senescence (p21 and γH2AX) and increased SPiDER-β-Gal+ cells, which inversely correlated with muscle mass. Single-cell resolution of SPiDER+ cells unmasked several senescent interstitial muscle vascular and stromal populations. Senescent interstitial cell populations were enriched in aged muscle and displayed a senescence-associated secretory phenotype (SASP) across multiple stromal, vascular, and immune cell types. Senolytic treatment reduced overall senescent cell burden, attenuated macrophage accumulation, and restored muscle mass and function in aged mice following disuse. These findings identify a multicellular senescence environment within the muscle interstitial niche as a hallmark of impaired muscle recovery following disuse.
    DOI:  https://doi.org/10.1126/sciadv.aed5255
  34. Proc Natl Acad Sci U S A. 2026 Jun 02. 123(22): e2522067123
      Cell cycle-dependent and independent mechanisms lead to the generation of mononucleated and multinucleated polyploid cells. The more than doubling of a cell's nuclear genome by endoreplication has been found to be an adaptation to genotoxic stress, enabling cell survival despite DNA damage. However, it remains unknown whether cells that increase ploidy via multinucleation also arise in response to genotoxic stress. Here, we use ultraviolet light A (UV-A) to induce permanent DNA damage in cells within the adult fruit fly epithelium. UV-A irradiation causes an injury-like response where giant multinucleated, polyploid cells arise following cell death. The epithelial cells undergo endoreplication, which is required to compensate for cell loss, but is surprisingly dispensable for tissue repair. UV-A irradiation also induces cell fusion, which generates multinucleated cells that encompass almost the entire epithelial area post injury. Cell fusion can be inhibited by expression of a dominant negative Rac or Cdc42 GTPase, which then blocks epithelial tissue repair postirradiation. Apoptotic nuclei were detected at the site of cell junction breakdown, suggesting that apoptosis itself or an apoptotic signal is required for polyploidization in this model. Expression of the effector caspase inhibitor, p35, led to inhibition of apoptosis, the endocycle, and cell fusion post UV-A. Therefore, we have found that caspase activation is necessary for polyploidization post injury and enhancing cell ploidy via multinucleation is another strategy to enable cell survival and tissue repair following genotoxic stress.
    Keywords:  Drosophila; cell fusion; genotoxic stress; polyploidy; tissue repair
    DOI:  https://doi.org/10.1073/pnas.2522067123
  35. Cardiovasc Res. 2026 May 28. pii: cvag119. [Epub ahead of print]
       AIMS: Cardiac fibrosis, a common pathological outcome of various heart diseases including myocardial infarction (MI), is primarily driven by the activation and trans-differentiation of cardiac fibroblasts which demand substantial ATP for energy. Although sodium-glucose cotransporter 2 (SGLT2) inhibitors such as dapagliflozin (DAPA) have been shown to improve outcomes in heart failure, their direct impact on cardiac fibrosis, particularly through the modulation of fibroblast energy metabolism remains unexplored.
    METHODS AND RESULTS: We employed an integrated strategy combining metabolomics and metabolic flux analysis to investigate metabolic reprogramming in cardiac fibroblasts under ischaemic conditions. Our findings confirmed that treatment with an SGLT2 inhibitor confers anti-fibrotic benefits post-MI. Multi-omics analysis identified a key metabolic pathway modulated in fibroblasts from SGLT2 inhibitor-treated mice under ischaemia: the conversion of N-acetyl-glutamate (NAcGlu) to fumarate, catalysed by argininosuccinate lyase (ASL). This pathway serves as a metabolic bridge linking the urea cycle to the tricarboxylic acid (TCA) cycle. Exogenous supplementation with either NAcGlu or fumarate significantly improved cardiac function and reduced fibrosis after MI. In contrast, targeted deletion of ASL in activated cardiac fibroblasts impaired cardiac performance, even with NAcGlu supplementation. Mechanistically, we found that fumarate accumulation under stress presses the TCA cycle in cardiac fibroblasts, resulting in reduced ATP production.
    CONCLUSIONS: These findings identify the NAcGlu/ASL/fumarate axis as an important regulator of fibroblast metabolism and trans-differentiation during ischaemic stress. Our data are consistent with a model in which targeting key metabolites (NAcGlu, fumarate) or enzymes (ASL) in the urea cycle pathway of cardiac fibroblasts may point to a potential therapeutic strategy to combat adverse cardiac fibrosis following MI.
    Keywords:  arginine biosynthesis; cardiac fibrosis; fumarate; myocardial infarction; urea cycle
    DOI:  https://doi.org/10.1093/cvr/cvag119
  36. Nat Cancer. 2026 May 25.
      The nutrient-sparse cerebrospinal fluid (CSF) poses a major challenge to spreading cancer cells. Despite this challenge, leukemia cells spread to the CSF, requiring aggressive central nervous system (CNS)-directed treatment that can lead to neurotoxicity. Here we used a targeted in vivo CRISPR screen to identify nutritional dependencies of systemic and CNS acute lymphoblastic leukemia (ALL). We show that copper depletion, either by genetic deletion of the transporter SLC31A1 or by dietary intervention, slows the growth of both systemic and CNS leukemia in a xenograft model. Mechanistically, copper depletion inhibits complex IV and nucleotide synthesis to slow the growth of leukemia cells. Furthermore, dietary depletion of copper combined with the standard-of-care therapy methotrexate inhibits leukemia progression in cell-line-derived and patient-derived xenograft models. Our findings identify copper as an actionable micronutrient to disrupt nucleotide synthesis in ALL and proposes copper depletion as a way to boost leukemia therapy in the hard-to-treat CNS.
    DOI:  https://doi.org/10.1038/s43018-026-01177-4
  37. Cell Rep. 2026 May 28. pii: S2211-1247(26)00483-3. [Epub ahead of print]45(6): 117405
      Centromere protein A (CENP-A), a centromeric histone H3 variant highly expressed in aggressive cancers, promotes epithelial-mesenchymal transition (EMT), yet its underlying mechanisms remain unresolved. Here, we used a reversible high-CENP-A expression system in human cells to follow EMT-state trajectories and CENP-A localization over time. Sustained CENP-A elevation shifted hybrid populations toward mesenchymal states and increased both centromeric loading and ectopic chromatin incorporation. Chromatin immunoprecipitation revealed ectopic CENP-A enrichment at EMT-associated loci. Single-nucleus multi-omics further resolved two EMT programs engaged at distinct cell cycle stages: CENP-A strengthened a pre-existing inflammatory program and triggered a developmental program. Importantly, restoring basal CENP-A levels erased these transcriptional programs and eliminated ectopic incorporation, consistent with a reversible, non-genetic mechanism. Together, our findings uncover a non-centromeric function for CENP-A in shaping epithelial-mesenchymal plasticity and cellular heterogeneity.
    Keywords:  CENP-A; CP: developmental biology; CP: molecular biology; cell cycle; centromere; chromatin; epigenetics; epithelial-mesenchymal transition; single-nucleus multi-omics
    DOI:  https://doi.org/10.1016/j.celrep.2026.117405
  38. Proc Natl Acad Sci U S A. 2026 Jun 02. 123(22): e2606868123
      Rapid activation of ERK (extracellular signal-regulated kinase) signaling drives transcriptional responses to injury across metazoans. Yet, it is unclear whether key aspects of ERK as a wound signal-its upstream inputs, activating cell type(s), and spatiotemporal pattern-are conserved. To facilitate thorough comparisons, we examined wound-induced ERK during whole-body regeneration in the acoel Hofstenia miamia. Wounding triggers rapid ERK activation, which begins in the most wound-proximal cells but expands distally over time among stem cells and muscle cells. ERK drives transcriptional responses to wounding in both cell types, and inhibiting ERK activation perturbs the progress of regeneration. Finally, neuregulin-1, a ligand produced exclusively by muscle cells, and its putative receptor egfr-1 (epidermal growth factor receptor-1) act upstream of ERK activation upon wounding. Our data identify a key signaling role of muscle cells in driving ERK activation following injury and reveal a spatial spreading phenomenon with both parallels to and distinctions from dynamic ERK patterns in other systems.
    Keywords:  EGFR; ERK; neuregulin; regeneration; wound signaling
    DOI:  https://doi.org/10.1073/pnas.2606868123
  39. Nature. 2026 May 27.
      Ageing and interventions modulate health and mortality1, yet the underlying molecular mechanisms of this modulation remain unclear. Here we integrate more than 11,000 transcriptomes from more than 25 tissues across 4 mammals (mouse, rat, macaque and human) to develop accurate, interpretable rodent and multi-species biomarkers of chronological age and expected mortality, predicting lifespan-modulating interventions, time to death, chronic diseases and rejuvenation. Ageing-related changes were conserved across species and cell types, revealing universal transcriptomic signatures of mammalian ageing and mortality, including CDKN1A and LGALS3, whose protein levels were also associated with mortality and multimorbidity in UK Biobank. Mortality-associated features were recapitulated across in vivo and in vitro damage-accumulation models, including inflammation, replicative senescence, metabolic inhibition and γ-irradiation, and were attenuated or reversed by cell immortalization, reprogramming, heterochronic parabiosis and early embryogenesis. Network analysis uncovered a modular architecture of ageing- and mortality-associated hallmarks, encompassing inflammation, interferon signalling, mitochondrial function, chromatin modification and extracellular matrix organization. To quantify ageing of individual cellular components, we developed module-specific clocks, which revealed pathway-specific effects of interventions: chronic diseases primarily accelerated inflammatory-module ageing, whereas caloric restriction and Klotho (also known as Kl) deficiency targeted mitochondrial and metabolic modules. Transcriptomic and DNA methylation clocks showed correlated age acceleration in human blood, which was strongest for the chromatin-associated module clock, highlighting mechanistic links between molecular ageing modalities. This study reveals conserved signatures and a modular architecture of mortality regulation, providing a framework for quantifying and targeting ageing of cellular subsystems across species and tissues.
    DOI:  https://doi.org/10.1038/s41586-026-10542-3
  40. Curr Biol. 2026 May 26. pii: S0960-9822(26)00568-3. [Epub ahead of print]
      During development, cells must interpret extracellular signals with speed and accuracy. While morphogen gradients pattern tissues, how cells respond to dynamic morphogens remains unclear. Here, we investigate how dorsal patterning in the Drosophila embryo is specified by a rapidly evolving BMP gradient. Using a live reporter of BMP pathway activity and nascent transcription reporters, we find that gene expression is best predicted by time integration of BMP signaling, rather than instantaneous levels. We show that the transcription factor Zen lowers the signaling threshold required for activation, enabling integration to drive rapid transcriptional responses even at low BMP levels. We tested our integration model using mutants that alter BMP signaling dynamics. Within the normal expression domain, integration was still predictive of gene expression. However, higher levels of integrated signaling were needed in more lateral regions of the embryo, suggesting additional spatial patterning regulation. Together, these results suggest that cells interpret dynamic morphogen signals through the combined action of temporal integration and spatial competence, providing a framework for robust pattern formation on fast developmental timescales.
    Keywords:  Dpp/BMP signaling; MS2/MCP system; drosophila melanogaster; live imaging of transcription; morphogen gradient; signal integration
    DOI:  https://doi.org/10.1016/j.cub.2026.04.064