bims-instec Biomed News
on Intestinal stem cells and chemoresistance in colon cancer and intestinal regeneration
Issue of 2026–05–31
twelve papers selected by
Maria-Virginia Giolito, Université Catholique de Louvain



  1. Stem Cells Transl Med. 2026 May 18. pii: szag043. [Epub ahead of print]15(6):
      How HOX transcription factors play a role in the stem cell (SC) origin of cancer is unclear. Our goal is to determine how dysregulation of HOX gene expression promotes colorectal cancer (CRC) development through aberrant SC regulatory mechanisms. We investigated retinoic acid (RA) and WNT signaling because they regulate HOX expression and both pathways are dysregulated in cancer. Previously, we reported WNT and RA pathways are functionally linked, and in CRC, APC mutation generates a WNT:RA imbalance leading to incomplete differentiation and SC overpopulation. We hypothesize that aberrant WNT- and RA-signaling dysregulates HOX expression that contributes to the SC origin of CRC. We discovered a HOX expression signature of eight genes (six-upregulated, two-downregulated) that are significantly altered in CRC, and that predict poor CRC patient survival. NanoString profiling of fluorescence activated cell sorted SC subpopulations, bioinformatics studies, and RNA-seq analysis of fresh colon tissues revealed: (1). The six-upregulated genes are regulated by RA signaling; (2). ATRA-treatment of CRC cells, but not wt-APC induction or RARA knockout, leads to a HOX expression pattern matching the HOX signature; (3). Mid-cluster (group 3) HOXB gene expression characterizes normal colon, but increased group 3 HOXC expression occurs in CRC; (4). LGR5+ SCs selectively express group 3 HOXB genes while ALDH+ SCs express group 3 HOXC genes; (5). HOXA13 and HOXB13 which are downregulated and predict poor patient survival likely possess tumor-suppressor activity and function by retro-inhibition of earlier HOX genes. Given HOX expression predicts survival and identifies SC phenotype, this indicates dysregulated HOX expression contributes to SC origin of CRC.
    Keywords:  HOX genes; WNT signaling; cancer stem cells; colorectal cancer; retinoic acid signaling
    DOI:  https://doi.org/10.1093/stcltm/szag043
  2. Dev Cell. 2026 May 26. pii: S1534-5807(26)00161-9. [Epub ahead of print]
      Peritoneal carcinomatosis (PC) is a common yet deadly manifestation of gastrointestinal cancers, with few effective treatments. To identify targetable determinants of peritoneal metastasis, we focused on appendiceal adenocarcinoma (AC), which metastasizes almost exclusively to the peritoneum. No stable preclinical models of AC exist, limiting drug discovery and representing an unmet clinical need. We establish a stable biobank of 16 long-term cultured AC patient-derived tumor organoids (PDTOs). We establish an organoid orthotopic intraperitoneal xenograft model that recapitulates diffuse PC and show that PC organoids retain increased metastatic capacity, decreased growth-factor dependency, and decreased sensitivity to standard-of-care chemotherapy relative to matched primary AC organoids. Single-cell profiling reveals dedifferentiation from differentiated states in primary AC into intestinal stem cell and fetal progenitor states in AC-PC, with upregulation of oncogenic signaling pathways. We identify KRASMULTI-ON inhibitor RMC-7977 and the Wnt-targeting tyrosine kinase inhibitor WNTinib as clinically actionable strategies to target AC-PC more effectively.
    Keywords:  KRAS inhibitor; appendiceal cancer; genomics; growth factor dependencies; intratumor heterogeneity; mouse model; organoids; peritoneal carcinomatosis; targeted therapies
    DOI:  https://doi.org/10.1016/j.devcel.2026.04.014
  3. Cell Metab. 2026 May 27. pii: S1550-4131(26)00185-3. [Epub ahead of print]
      Colorectal cancer (CRC) cells are addicted to iron, which fuels nucleotide synthesis, mitochondrial respiration, and proliferation. Yet paradoxically, high intracellular iron is cytotoxic to most cells, raising the question of how CRC cells tolerate and exploit iron-rich environments. Ferroptosis, an iron-dependent form of cell death, is thought to mediate iron toxicity. However, whether most ferroptosis regulators, identified through synthetic chemical screens or small molecule activators, play a role in modulating iron toxicity, particularly in vivo, remains unclear. Here, using multi-omics profiling, CRISPR screening, and in vivo models, we uncover a heme-succinate dehydrogenase (SDH)-coenzyme Q (CoQ) axis that enables CRC cells to buffer iron-induced oxidative stress. Heme-dependent SDH reduces CoQ, which redistributes to mitochondrial and plasma membranes to detoxify lipid reactive oxygen species (ROS) as a radical-trapping antioxidant. These findings reveal that CRCs co-opt metabolic cofactors both for growth and for survival under physiologically toxic iron levels, uncovering new vulnerabilities for therapy.
    Keywords:  colorectal cancer; iron toxicity; mitochondrial antioxidant; oxidative stress
    DOI:  https://doi.org/10.1016/j.cmet.2026.04.020
  4. Cell Death Dis. 2026 May 28.
      KRASG12D is one of the most prevalent and treatment-refractory mutations in colorectal cancer (CRC). The emergence of selective KRASG12D inhibitors offers new therapeutic opportunities, yet preclinical evidence indicates that monotherapy efficacy is constrained by signaling feedback and pathway redundancy, emphasizing the need for rational combination strategies. We systematically evaluated the biochemical, biological, and therapeutic activity of single, dual, and triple regimens combining the KRASG12D inhibitor MRTX1133 with cetuximab (EGFR inhibitor), alpelisib (PI3Kα inhibitor), or trametinib (MEK inhibitor) in a panel of patient-derived tumoroids and xenografts (PDXs) from metastatic CRC. MRTX1133 displayed mutation-specific activity in KRASG12D-mutant tumoroids. Dual blockade of KRASG12D and EGFR with MRTX1133 + cetuximab achieved near-complete inhibition of MAPK and PI3K-AKT signaling, with only marginal additional suppression upon addition of alpelisib or trametinib. In PDX models, triple combinations conferred no survival advantage over MRTX1133 + cetuximab. Likewise, dual therapy with trametinib + cetuximab was as effective as the triple regimen, suggesting functional redundancy between direct KRAS inhibition and downstream MEK blockade when EGFR is co-targeted. In non-KRASG12D-mutant models, MRTX1133 + cetuximab modestly reduced KRAS pathway activity and slightly delayed tumor growth, consistent with a potential 'leakage effect'. Collectively, our results identify dual KRASG12D - EGFR inhibition as the regimen delivering maximal pathway suppression and therapeutic benefit in clinically relevant CRC models, with no clear advantage from more complex triple combinations. This work encourages prioritizing KRAS-EGFR co-targeting over multi-agent strategies that risk added toxicity, and provides a strong rationale for advancing KRASG12D inhibitors + cetuximab as a backbone targeted therapy in future clinical trials for KRASG12D-mutant CRC.
    DOI:  https://doi.org/10.1038/s41419-026-08900-0
  5. Cell Death Differ. 2026 May 26.
      Oncogene-induced senescence (OIS), a cellular programme initiated by activation of oncogenic signalling, provides a barrier to transformation and is accompanied by major reprogramming of cellular metabolism. We show here that induction of OIS by BRAFV600E expression in human diploid fibroblasts led to global changes in the cellular lipidome, characterised by a strong increase in triglycerides (TG) and a marked reduction in membrane phosphoglycerides carrying polyunsaturated fatty acids (PUFA) in their acyl-chains. Induction of BRAFV600E OIS resulted in a marked resistance towards lipid peroxidation and ferroptosis. Inhibition of TG synthesis by blocking diacylglycerol O-acyltransferase 1 (DGAT1) resulted in PUFA re-distribution to membrane lipids and increased ferroptosis sensitivity of senescent cells. Inhibition of DGAT also altered the senescence-associated secretory phenotype (SASP) and enhanced the secretion of oxylipins by BRAFV600E OIS cells. Combined blockade of DGAT1-dependent TG and COX2-dependent oxylipin synthesis fully restored ferroptosis sensitivity in BRAFV600E OIS cells. Together, these findings indicate that channelling of PUFA towards TG synthesis confers protection from oxidative stress and ferroptosis during BRAFV600E OIS but also limits the production of pro-inflammatory lipid mediators, a key feature of the senescent phenotype.
    DOI:  https://doi.org/10.1038/s41418-026-01766-x
  6. Cancer Lett. 2026 May 25. pii: S0304-3835(26)00383-6. [Epub ahead of print]655 218620
      Angiogenesis supports colorectal cancer (CRC) proliferation and metastasis, yet how lipid metabolic reprogramming intersects with angiogenesis signaling remains unclear. Here, we found that LINC01186 is upregulated in CRC and correlates with advanced stage and poor prognosis. Mechanistically, LINC01186 functions as a molecular scaffold that concurrently interacts with the deubiquitinating enzyme USP4 and long-chain fatty acyl-CoA synthetase ACSL4, facilitating USP4-mediated deubiquitination of ACSL4. Elevated ACSL4 facilitates the accumulation of polyunsaturated fatty acids (PUFAs), namely arachidonic acid, eicosapentaenoic acid, and docosahexaenoic acid. Notably, elevated PUFA levels protect VEGFA from autophagy-lysosomal degradation by reducing autophagic flux, resulting in VEGFA overexpression and consequent promotion of angiogenesis. The absence of LINC01186 or ACSL4 impairs this signaling cascade, reduces PUFA levels, reactivates the autophagic degradation of VEGFA, and markedly obstructs the migration, invasion, and angiogenesis of CRC cells both in vitro and in vivo. Exogenous PUFA supplementation fully restores these abnormalities, which supports the essential involvement of lipid reprogramming in this mechanism. The LINC01186/ACSL4/VEGFA axis is essential in the formation and progression of CRC, with the overexpression of LINC01186 likely acting as a significant catalyst for excessive angiogenesis and metastatic advancement. Our findings highlight a unique lncRNA-mediated regulatory mechanism that connects deubiquitination, lipid metabolism, autophagy, and angiogenesis. Notably, although ferroptosis was not directly assessed in this study, the LINC01186/USP4/ACSL4 axis may have broader implications for ferroptosis research given that ACSL4 is a critical regulator of ferroptosis. Taken together, these results suggest that the LINC01186/USP4/ACSL4 axis represents a prospective therapeutic target for anti-angiogenic treatment in CRC.
    Keywords:  Angiogenesis; Autophagy; Colorectal cancer; Lipid reprogramming; Ubiquitination
    DOI:  https://doi.org/10.1016/j.canlet.2026.218620
  7. Sci Adv. 2026 May 29. 12(22): eaeb2368
      Modulating ferroptosis, a form of cell death driven by uncontrolled lipid peroxidation, is of interest in numerous diseases. Here, we found that the deletion of phosphoglycolate phosphatase (PGP), an essential enzyme that safeguards high glycolytic flux, suppresses ferroptosis. Using metabolomic and isotopic labeling experiments together with lipid and proteomic profiling, we find that PGP loss drives a rewiring of the pentose phosphate pathway and of cellular energy and lipid metabolism that triggers a multifactorial antioxidant response. Paradoxically, our attempts to block PGP pharmacologically led to the realization that the recently described PGP inhibitor compound 1 (CP1) exerts a strong ferroptosis-sensitizing effect. Using genetic, biochemical, and biophysical approaches, we characterize CP1 as a direct, species-independent, dual inhibitor of PGP and ferroptosis suppressor protein 1 (FSP1), and further find that CP1 triggers FSP1 self-assembly. In sum, we identify PGP as a target protein for ferroptosis control and introduce a small-molecule FSP1 inhibitor with unique features to the armamentarium of pharmacological ferroptosis modulators.
    DOI:  https://doi.org/10.1126/sciadv.aeb2368
  8. Mol Cancer. 2026 May 25.
      Cancer stem cells (CSCs) drive tumour initiation, progression, metastasis, and therapy resistance through their remarkable plasticity, enabling dynamic transitions between stem-like and differentiated states. A pivotal mechanism underlying this plasticity is epithelial-mesenchymal plasticity (EMP), which encompasses epithelial-mesenchymal transition (EMT), partial or hybrid EMT (E/M) states, and mesenchymal-epithelial transition (MET), allowing cancer cells to acquire invasive, stem-like properties while maintaining proliferative potential. Unlike the traditional binary view of EMT, recent evidence reveals a spectrum of intermediate E/M phenotypes that exhibit increased tumorigenicity, metastatic potential, and therapy resistance. This plasticity is orchestrated by intricate regulatory networks involving EMT-inducing transcription factors, signalling pathways, and non-coding RNAs. The tumour microenvironment (TME), with its cellular and non-cellular components, provides critical extrinsic cues that stabilize E/M states. Notably, metabolic reprogramming cooperates with EMP. Indeed, E/M flexibly shifts between glycolysis, oxidative phosphorylation, and lipid metabolism alterations to fuel invasion, buffer oxidative stress, and evade ferroptosis. Advanced and recently developed in vitro and in vivo models have illuminated these dynamics: dual-fluorescent reporters, microfluidic tumour-on-a-chip, genetically engineered mouse models, bioluminescence imaging, and intravital microscopy enable real-time tracking of EMP during progression and therapy response. On the other side, in silico tools, single-cell/spatial transcriptomics, network inference, machine learning, and agent-based modelling, map hybrid states, predict trajectories, and help identify biomarkers, revealing EMP's role in evolutionary fitness. Therapeutically, targeting EMP holds promise to target resistant cancer cells and prevent relapse, though challenges arise from redundancy and plasticity. Strategies include pathway inhibitors, metabolic disruptors, epigenetic agents, TME modulators, and differentiation inducers. Combination therapies, guided by EMP biomarkers and rational models, act in combination with standard treatments to lock cells in epithelial states, disrupt hybrid phenotypes, and overcome resistance. This review highlights EMP as the main driver of tumour evolution, offering a unified framework for understanding tumour heterogeneity and heterogeneity-driven failures in therapy. By elucidating molecular mechanisms and vulnerabilities, it paves the way for precision interventions that could transform outcomes in aggressive malignancies, ultimately restraining metastasis and recurrence.
    DOI:  https://doi.org/10.1186/s12943-026-02690-x
  9. Cell Rep Med. 2026 May 28. pii: S2666-3791(26)00257-0. [Epub ahead of print] 102840
      This study reports the pharmacogenomic analysis of tumor heterogeneity in a living biobank of 213 organoids derived from liver metastases of 102 patients with metastatic colorectal cancer. Successful organoid establishment reflects poorer chemosensitivity and patient survival. Molecular fidelity is confirmed in tumor-organoid pairs, and multi-modal phenotypes are defined based on organoid morphology. Cystic morphology associates with intestinal stem cell markers and greater drug sensitivity, while solid morphology is linked to markers of plasticity and aggressiveness. The potential to identify treatments less affected by tumor heterogeneity is supported by multi-lesion analyses in 65 patients. Clinical translation is illustrated in two prospective cases of pharmacogenomics-guided treatment, including successful chemotherapy rechallenge and targeted therapy resistance in cancers with low and high heterogeneity. All pharmacogenomic data are openly available as a functional oncology resource to support interpretation of ex vivo drug sensitivities into clinical "actionability."
    Keywords:  colorectal cancer; drug screening; functional oncology; heterogeneity; metastasis; molecular profiling; patient-derived organoids; pharmacogenomics
    DOI:  https://doi.org/10.1016/j.xcrm.2026.102840
  10. J Biol Chem. 2026 May 25. pii: S0021-9258(26)02065-X. [Epub ahead of print] 113193
      The hypoxia-inducible factor-1α (HIF-1α) has canonically been described as a primary regulator of glucose metabolism in hypoxic cells through transcriptional upregulation of all 10 glycolytic enzymes. Here, using 13C-glucose and 13C-glutamine tracing in intestinal epithelial cells with defined HIF1A genetic perturbations, we demonstrate that hypoxia-induced glycolysis can occur independently of HIF-1-driven transcription. While hypoxia modulates glucose-derived carbon flux into anabolic branches of glycolysis independent of HIF-1α, HIF-1α plays an important role in modulating glucose and glutamine utilisation within the TCA cycle. These alterations in substrate utilisation highlight the layered regulatory framework whereby HIF-1α regulates distinct aspects of glucose and glutamine metabolism in intestinal epithelial cells to impact the rate of intestinal epithelial cell growth and promote metabolic adaptation to hypoxia.
    Keywords:  HIF-1; Hypoxia; TCA cycle; glucose metabolism; glycolysis; metabolomics
    DOI:  https://doi.org/10.1016/j.jbc.2026.113193
  11. Cell Rep. 2026 May 28. pii: S2211-1247(26)00528-0. [Epub ahead of print]45(6): 117450
      Tumor-associated macrophages (TAMs) pose a significant obstacle to successful cancer immunotherapy in colorectal cancer (CRC). Herein, we demonstrate that genetic deletion of PGE2 receptors EP2/EP4 markedly sensitizes CRC tumors to anti-PD-1 therapy. We then report the development of TP-18, a potent and orally available dual EP2/EP4 antagonist. TP-18 treatment effectively depletes a highly immunosuppressive VSIG4high TAM subset and enhances cytotoxic CD8+ T cell-mediated CRC tumor elimination. Mechanistically, TP-18 dampens the expression of VSIG4 by blunting EP2/EP4-Gαs-PKA signaling. Notably, VSIG4high TAMs from CRC-tumor-bearing mice display robust immunosuppressive features, and similar VSIG4high populations are also detected in patients with CRC and other cancers. Importantly, TP-18 improves the therapeutic efficacy of anti-PD-1 therapy in CRC mouse models and in patient-derived tumor immune organoids. Collectively, our findings establish targeting of EP2/EP4-driven expansion of VSIG4high TAMs as a promising therapeutic strategy to overcome immunotherapy resistance.
    Keywords:  CP: cancer; VSIG4; cancer immunotherapy; colorectal cancer; immunosuppression; immunotherapy resistance; prostaglandin E2; tumor immune microenvironment; tumor-associated macrophages
    DOI:  https://doi.org/10.1016/j.celrep.2026.117450