Proc Natl Acad Sci U S A. 2024 Apr 23. 121(17): e2315018121
Duc Minh Nguyen,
Deanna H Rath,
Dominic Devost,
Darlaine Pétrin,
Robert Rizk,
Alan X Ji,
Naveen Narayanan,
Darren Yong,
Andrew Zhai,
Douglas A Kuntz,
Maha U Q Mian,
Neil C Pomroy,
Alexander F A Keszei,
Samir Benlekbir,
Mohammad T Mazhab-Jafari,
John L Rubinstein,
Terence E Hébert,
Gilbert G Privé.
Heterotrimeric G proteins can be regulated by posttranslational modifications, including ubiquitylation. KCTD5, a pentameric substrate receptor protein consisting of an N-terminal BTB domain and a C-terminal domain, engages CUL3 to form the central scaffold of a cullin-RING E3 ligase complex (CRL3KCTD5) that ubiquitylates Gβγ and reduces Gβγ protein levels in cells. The cryo-EM structure of a 5:5:5 KCTD5/CUL3NTD/Gβ1γ2 assembly reveals a highly dynamic complex with rotations of over 60° between the KCTD5BTB/CUL3NTD and KCTD5CTD/Gβγ moieties of the structure. CRL3KCTD5 engages the E3 ligase ARIH1 to ubiquitylate Gβγ in an E3-E3 superassembly, and extension of the structure to include full-length CUL3 with RBX1 and an ARIH1~ubiquitin conjugate reveals that some conformational states position the ARIH1~ubiquitin thioester bond to within 10 Å of lysine-23 of Gβ and likely represent priming complexes. Most previously described CRL/substrate structures have consisted of monovalent complexes and have involved flexible peptide substrates. The structure of the KCTD5/CUL3NTD/Gβγ complex shows that the oligomerization of a substrate receptor can generate a polyvalent E3 ligase complex and that the internal dynamics of the substrate receptor can position a structured target for ubiquitylation in a CRL3 complex.
Keywords: BTB proteins; G proteins; cryo electron microscopy; ubiquitin ligase