bims-skolko Biomed News
on Scholarly communication
Issue of 2023‒03‒05
29 papers selected by
Thomas Krichel
Open Library Society


  1. Breathe (Sheff). 2022 Dec;18(4): 220160
      Practical tips and guidance on peer review are provided by three scientists in the respiratory field, to help early career researchers who may be invited to review papers for respiratory journals https://bit.ly/3EuWpoH.
    DOI:  https://doi.org/10.1183/20734735.0160-2022
  2. Int Orthop. 2023 Mar 01.
      PURPOSE: To establish the current peer-reviewed practices in the discipline of orthopaedic surgery and correlate these to the journal's impact factor. Unfortunately, this is not receiving much attention and a critical literature gap in various disciplines; thus, determining the current practices in the discipline of orthopaedic surgery could provide valid insight that may be potentially applicable to other academic medicine disciplines as well.METHODS: Orthopaedic surgery journals belonging to the Journal Citation Reports were queried, and the following was extracted: impact factor (IF) and blinding practices: single (SBPR), double (DBPR), triple (TBPR), quadruple (QBPR), and open (OPR) blinding review process and possibility of author-suggested reviewer (ASR) and non-preferred reviewer (NPR) options.
    RESULTS: Of the 82 journals, four were excluded as they allowed submission by invitation only. In the remaining, blinding was as follows: SBPR nine (11.5%), DBPR 52 (66.7%), TBPR two (2.6%), QBPR zero (0%), and OPR three (3.8%), and in 12 (15.4%), this was unclear. ASR and NPR options were offered by 34 (43.6%) and 27 (34.6%) journals respectively, whereas ASR was mandatory in eight (10.2%). No correlation between IF and any other parameter was found.
    CONCLUSION: The rules of the "game" are unclear/not disclosed in a significant number of cases, and the SBPR system, along with the ASR (mandatory sometimes) and NPR, is still extensively used with questionable integrity and fairness. Several recommendations are provided to mitigate potentially compromising practices, along with future directions to address the scarcity of research in this critical aspect of science.
    Keywords:  Academic medicine; Fairness; Manuscript blinding; Orthopedic surgery; Peer review practices
    DOI:  https://doi.org/10.1007/s00264-023-05729-6
  3. Integr Org Biol. 2023 ;5(1): obad003
      In the field of organismal biology, as in much of academia, there is a strong incentive to publish in internationally recognized, highly regarded, English-language journals to promote career advancement. This expectation has created a linguistic hegemony in scientific publishing, whereby scholars for whom English is an additional language face additional barriers to achieving the same scientific recognition as scholars who speak English as a first language. Here, we surveyed the author guidelines of 230 journals in organismal biology with impact factors of 1.5 or greater for linguistically inclusive and equitable practices and policies. We looked for efforts that reflect first steps toward reducing barriers to publication for authors globally, including the presence of statements that encouraged submissions from authors of diverse nationalities and backgrounds, policies regarding manuscript rejection based on perceived inadequacies of the English language, the existence of bias-conscious reviewer practices, whether translation and editing resources or services are available, allowance for non-English abstracts, summaries, or translations, and whether journals offer license options that would permit authors (or other scholars) to translate their work and publish it elsewhere. We also directly contacted a subset of journals to verify whether the information on their author guidelines page accurately reflects their policies and the accommodations they would make. We reveal that journals and publishers have made little progress toward beginning to recognize or reduce language barriers. Counter to our predictions, journals associated with scientific societies did not appear to have more inclusive policies compared to non-society journals. Many policies lacked transparency and clarity, which can generate uncertainty, result in avoidable manuscript rejections, and necessitate additional time and effort from both prospective authors and journal editors. We highlight examples of equitable policies and summarize actions that journals can take to begin to alleviate barriers to scientific publishing.
    DOI:  https://doi.org/10.1093/iob/obad003
  4. Interdiscip Cardiovasc Thorac Surg. 2023 Feb 06. pii: ivad022. [Epub ahead of print]36(2):
      
    Keywords:  Editorial process; Peer-review
    DOI:  https://doi.org/10.1093/icvts/ivad022
  5. Fertil Steril. 2023 Feb 24. pii: S0015-0282(23)00152-8. [Epub ahead of print]
      Trustworthiness of medical publications can depend on either good faith or verifiable data. Most medical publications to-date have been advertisements, some form of scholarly boasting. The authors practically announce to the world that they did some research. In good faith, other scientists as well as practitioners of medicine, guideline developers, and patients are asked to take these advertisements seriously, buy into them, and make important (occasionally life-or-death) decisions based on what they say. However, the raw data are usually not made available. Other crucial parts that would allow to verify the research, including the code, detailed protocols and statistical analysis plans have also been uncommonly shared - or they may not exist. Under such circumstances, is faith misplaced when one accepts that the work presented is real?
    DOI:  https://doi.org/10.1016/j.fertnstert.2023.02.023
  6. J Surg Educ. 2023 Feb 27. pii: S1931-7204(23)00057-0. [Epub ahead of print]
      OBJECTIVE: As coronavirus disease 2019 affects clinical training opportunities and with the transition of U.S. Medical Licensing Examination Step 1 to pass-fail, research may become increasingly important for evaluating ophthalmology residency applicants. Though publication misrepresentation has been studied among ophthalmology residency applicants, eventual publication rates of incomplete articles remain unknown. We aimed to determine publication rates for manuscripts listed as "submitted" or "in preparation" on ophthalmology residency applications and identify factors associated with unpublished manuscripts.DESIGN: San Francisco Match applications to the Wilmer Eye Institute for the 2019 ophthalmology residency cycle were retrospectively reviewed. Each applicant's number of "published," "submitted," and "in preparation" manuscripts was recorded, then verified 1.5 years later through PubMed, Google Scholar, or journal websites. Unverifiable manuscripts were deemed "unpublished."
    SETTING: Single academic institution (Wilmer Eye Institute, Baltimore, MD, USA) PARTICIPANTS: All 458 medical students who applied to the Wilmer Eye Institute for the 2019 ophthalmology residency cycle through the San Francisco Match.
    RESULTS: A total of 458 applications were reviewed. Of 428 "submitted" publications, 126 (29.4%) remained unpublished after 1.5 years. Of 324 manuscripts "in preparation," 215 (66.4%) remained unpublished. In a multivariate model, AOA was associated with not having an unpublished manuscript compared to applicants without AOA (OR: 0.423, p = 0.0163). Gender, Step 1 score, additional degrees, and a research year had no association.
    CONCLUSIONS: Nearly two-thirds of manuscripts listed as "in preparation" remained unpublished. Specific guidance from research mentors may help applicants better represent their publications in residency applications.
    Keywords:  San Francisco Match; application; ophthalmology; publication; research; residency
    DOI:  https://doi.org/10.1016/j.jsurg.2023.02.005
  7. J Educ Eval Health Prof. 2023 ;20 6
      At the end of 2022, the appearance of ChatGPT, an artificial intelligence (AI) chatbot with amazing writing ability, caused a great sensation in academia. The chatbot turned out to be very capable, but also capable of deception, and the news broke that several researchers had listed the chatbot (including its earlier version) as co-authors of their academic papers. In response, Nature and Science expressed their position that this chatbot cannot be listed as an author in the papers they publish. Since an AI chatbot is not a human being, in the current legal system, the text automatically generated by an AI chatbot cannot be a copyrighted work; thus, an AI chatbot cannot be an author of a copyrighted work. Current AI chatbots such as ChatGPT are much more advanced than search engines in that they produce original text, but they still remain at the level of a search engine in that they cannot take responsibility for their writing. For this reason, they also cannot be authors from the perspective of research ethics.
    Keywords:  Artificial intelligence; Authorship; Chatbot; Copyright; Research ethics
    DOI:  https://doi.org/10.3352/jeehp.2022.20.6
  8. Account Res. 2023 Mar 01.
      The use of artificial intelligence (AI)-based natural language processing (NLP) models could promote a covert practice of AI-based plagiarism, or "aigiarism". Journals that do not impose an outright ban on the use of NLP models in manuscript preparation would asked that such uses be disclosed by the authors. We posit that it is equally important that an active and explicit declaration be made, should it be the case, for not having used any NLP models in manuscript preparation.
    Keywords:  Aigiarism; accountability; authorship; generative AI; natural language processing (NLP) models
    DOI:  https://doi.org/10.1080/08989621.2023.2185776
  9. Res Sq. 2023 Feb 20. pii: rs.3.rs-2587766. [Epub ahead of print]
      Background: The emergence of systems based on large language models (LLMs) such as OpenAI's ChatGPT has created a range of discussions in scholarly circles. Since LLMs generate grammatically correct and mostly relevant (yet sometimes outright wrong, irrelevant or biased) outputs in response to provided prompts, using them in various writing tasks including writing peer review reports could result in improved productivity. Given the significance of peer reviews in the existing scholarly publication landscape, exploring challenges and opportunities of using LLMs in peer review seems urgent. After the generation of the first scholarly outputs with LLMs, we anticipate that peer review reports too would be generated with the help of these systems. However, there are currently no guidelines on how these systems should be used in review tasks. Methods: To investigate the potential impact of using LLMs on the peer review process, we used five core themes within discussions about peer review suggested by Tennant and Ross-Hellauer. These include 1) reviewers' role, 2) editors' role, 3) functions and quality of peer reviews, 4) reproducibility, and 5) the social and epistemic functions of peer reviews. We provide a small-scale exploration of ChatGPT's performance regarding identified issues. Results: LLMs have the potential to substantially alter the role of both peer reviewers and editors. Through supporting both actors in efficiently writing constructive reports or decision letters, LLMs can facilitate higher quality review and address issues of review shortage. However, the fundamental opacity of LLMs' inner workings and development, raise questions and concerns about potential biases and the reliability of review reports. Additionally, as editorial work has a prominent function in defining and shaping epistemic communities, as well as negotiating normative frameworks within such communities, partly outsourcing this work to LLMs might have unforeseen consequences for social and epistemic relations within academia. Regarding performance, we identified major enhancements in only a few weeks (between December 2022 and January 2023) and expect ChatGPT to continue improving. Conclusions: We believe that LLMs are likely to have a profound impact on academia and scholarly communication. While they have the potential to address several current issues within the scholarly communication system, many uncertainties remain and their use is not without risks. In particular, concerns about the amplification of existing biases and inequalities in access to appropriate infrastructure warrant further attention. For the moment, we recommend that if LLMs are used to write scholarly reviews, reviewers should disclose their use and accept full responsibility for their reports' accuracy, tone, reasoning and originality.
    DOI:  https://doi.org/10.21203/rs.3.rs-2587766/v1
  10. Crit Care. 2023 02 25. 27(1): 75
      This paper discusses the use of Artificial Intelligence Chatbot in scientific writing. ChatGPT is a type of chatbot, developed by OpenAI, that uses the Generative Pre-trained Transformer (GPT) language model to understand and respond to natural language inputs. AI chatbot and ChatGPT in particular appear to be useful tools in scientific writing, assisting researchers and scientists in organizing material, generating an initial draft and/or in proofreading. There is no publication in the field of critical care medicine prepared using this approach; however, this will be a possibility in the next future. ChatGPT work should not be used as a replacement for human judgment and the output should always be reviewed by experts before being used in any critical decision-making or application. Moreover, several ethical issues arise about using these tools, such as the risk of plagiarism and inaccuracies, as well as a potential imbalance in its accessibility between high- and low-income countries, if the software becomes paying. For this reason, a consensus on how to regulate the use of chatbots in scientific writing will soon be required.
    Keywords:  Artificial intelligence; Chatbots; Machine learning; Scientific writing
    DOI:  https://doi.org/10.1186/s13054-023-04380-2
  11. Nature. 2023 Mar;615(7950): 175-177
      
    Keywords:  Authorship; Careers; Medical research; Physics; Publishing
    DOI:  https://doi.org/10.1038/d41586-023-00575-3
  12. Semin Oncol Nurs. 2023 Feb 23. pii: S0749-2081(23)00026-8. [Epub ahead of print] 151395
      OBJECTIVES: This article provides practical guidance on developing a comprehensible abstract, including those required for funding applications, conferences, and publication. In addition, we discuss and demonstrate the practicalities of editing and revising an abstract for conference or peer review and identify emerging formats that may be more relevant to nurses and researchers.DATA SOURCES: This article has been informed by literature and the coauthors' respective experiences of preparing and reviewing abstracts for publication and conference presentation.
    CONCLUSION: Abstracts are a valuable tool to communicate the most important elements of the methods and results of a research project for a conference, manuscript, or even a research funding application. However, abstracts may often be an overlooked part of the dissemination process. An abstract determines whether or not a piece of research is relevant for presentation at a conference or valuable enough to be considered for peer review and subsequent publication. A strong and clearly written abstract positively predisposes reviewers of grant applications.
    IMPLICATIONS FOR NURSING PRACTICE: Writing an abstract is arguably the most challenging component of academic writing, summarizing the results of a substantive research project in three to five sentences and positioning them concisely within the background and implications for future practice, policy, and research. A well-written abstract is clear, concise, and critical and requires time and revision to ensure success.
    Keywords:  Abstract; Abstracting; Indexing; Journal article; Meeting abstract; Writing skills
    DOI:  https://doi.org/10.1016/j.soncn.2023.151395
  13. Teach Learn Med. 2023 Feb 26. 1-9
      Issue: There is an unspoken requirement that medical education researchers living in the Global South must disseminate their work using dominant frames constructed by individuals living in the Global North. As such, the published literature in our field is dominated by researchers whose work primarily benefits the Western world, casting the rest of what is published as localized and unhelpful knowledge. In this article, we use Audre Lorde's conception of the Master's house as a metaphor to narrate the experiences of two South African medical education researchers trying to disseminate their work into North American venues. In addition to narrating these stories, we describe the personal and professional consequences they experienced as a result of their efforts. Evidence: For researchers working outside of the Global North, entering the Master's formidable house is daunting, and there is no clear pathway in. These narratives illustrate how reviewers and editorial staff act as gatekeepers, continuously shaping ideas about what it means to do acceptable research, and who is allowed to disseminate it within the field. These narratives also show that those who have been rejected by these gatekeepers are often conflicted about their position within the larger field of medical education. Implications: To begin to address this issue, we have made several suggestions for the research community to consider. First, medical education research journals need to create spaces for researchers publishing from the Global South. One suggestion is for journals to create a submission type that is dedicated to researchers working outside of North America. Second, journals should also include more Global South editors and reviewers to help with knowledge translation when articles are submitted from outside North America. If our collective goal is to improve the training of physicians and the health outcomes of humanity, then we need to renovate the Master's house and begin to break down the barriers that separate us from truly building together.
    Keywords:  Global South; master’s house; narrative; research and publishing
    DOI:  https://doi.org/10.1080/10401334.2023.2181815
  14. BMC Med Res Methodol. 2023 Feb 27. 23(1): 53
      BACKGROUND: The study aimed to explore reporting characteristics of scoping reviews in dental public health and the impact of some factors on the reporting quality.METHODS: This study searched for dental public health scoping reviews in PubMed and Scopus without year restrictions and restricted to English-language publications. Study selection was undertaken by two reviewers independently. One reviewer, after training, extracted data from included studies considering general study characteristics and reporting characteristics. The impact of PRISMA-ScR publication, journal endorsement, and use of study protocol on the reporting was explored.
    RESULTS: Eighty-one scoping reviews were included. Five items presented rates of appropriate reporting higher than 80% considering the overall percentage. Related to the impact of PRISMA-ScR publication, six items were found more often in scoping reviews published after the publication of PRISMA-ScR than in scoping reviews published before the publication of PRISMA-ScR. With regards to journals endorsement, only two reporting characteristics were found more often in scoping reviews published in journals that endorse the PRISMA-ScR statement than in scoping reviews published in non-endorsers journals. Last, regarding the use of the pre-specified protocol, five reporting characteristics presented differences in studies reporting the use of pre-specified protocol than in studies that did not mention the use of a protocol. All differences were statistically significant.
    CONCLUSIONS: Important information is missing in the included scoping reviews demonstrating crucial reporting problems.
    Keywords:  Dentistry; Methods; Public health; Reporting; Scoping review
    DOI:  https://doi.org/10.1186/s12874-023-01863-2
  15. Vet Comp Orthop Traumatol. 2023 Mar;36(2): v-vi
      
    DOI:  https://doi.org/10.1055/s-0043-1762582
  16. Adv Health Sci Educ Theory Pract. 2023 Feb 28.
      This column is intended to address the kinds of knotty problems and dilemmas with which many scholars grapple in studying health professions education. In this first article, the authors address the question of how to respond to a request for revisions after review, including the quandary of how best to respond to conflicting feedback.
    DOI:  https://doi.org/10.1007/s10459-023-10213-2
  17. Compr Rev Food Sci Food Saf. 2023 Feb 27.
      
    DOI:  https://doi.org/10.1111/1541-4337.13133
  18. Account Res. 2023 Mar 01.
      
    Keywords:  AI-based detection; criteria; ethical principles; transparency
    DOI:  https://doi.org/10.1080/08989621.2023.2186225
  19. Front Public Health. 2023 ;11 1078115
      Introduction: Preprints have become an important tool for meeting the challenges of health communication in the context of COVID-19. They allow scientists to disseminate their results more quickly due to the absence of a peer review process. Preprints have been well-received by scientists, however, there have been concerns about the exposure of wider public audiences to preprints due in part to this lack of peer review.Methods: The aim of this study is to examine the dissemination of preprints on medRxiv and bioRxiv during the COVID-19 pandemic using content analysis and statistical analysis.
    Results: Our findings show that preprints have played an unprecedented role in disseminating COVID-19-related science results to the public.
    Discussion: While the overall media coverage of preprints is unsatisfactory, digital native news media performed better than legacy media in reporting preprints, which means that we could make the most of digital native media to improve health communication. This study contributes to understanding how science communication has evolved in response to the COVID-19 pandemic and provides some practical recommendations.
    Keywords:  COVID-19; health communication; open science; preprints; science communication; scientific journalism
    DOI:  https://doi.org/10.3389/fpubh.2023.1078115