bims-skolko Biomed News
on Scholarly communication
Issue of 2025–01–12
24 papers selected by
Thomas Krichel, Open Library Society



  1. Nature. 2025 Jan 06.
      
    Keywords:  Publishing; Scientific community
    DOI:  https://doi.org/10.1038/d41586-025-00011-8
  2. Nature. 2025 Jan 03.
      
    Keywords:  Publishing; Research data; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-04006-9
  3. BMJ Evid Based Med. 2025 Jan 09. pii: bmjebm-2024-112967. [Epub ahead of print]
       BACKGROUND: Peer review may improve the quality of research manuscripts and aid in editorial decisions, but reviewers can have conflicts of interest that impact on their recommendations.
    OBJECTIVES: The objective was to systematically map and describe the extent and nature of empirical research on peer reviewers' conflicts of interest in biomedical research.
    DESIGN: Scoping review METHODS: In this scoping review, we included studies investigating peer reviewers' conflicts of interest in journal manuscripts, theses and dissertations, conference abstracts, funding applications and clinical guidelines. We searched MEDLINE, Embase, The Cochrane Methodology Register, Google Scholar (up to January 2024) and other sources. Two authors independently included studies and extracted data on key study characteristics and results, and we organised data by study domain (eg, journal manuscripts) and study aims. We included studies directly investigating peer reviewers' conflicts of interest in our primary analysis, and studies investigating other questions (eg, reasons for retraction), but reporting relevant data on peer reviewers' conflicts of interest, were solely included in a supplementary analysis.
    RESULTS: After screening 44 353 references, we included 71 studies, of which 41 were included in our primary analysis. The 41 studies were published between 2005 and 2023, and 34 (83%) were journal publications. 30 (73%) studies investigated journal manuscripts, 1 (2%) conference abstracts, 4 (10%) funding applications and 6 (15%) clinical guidelines. No studies investigated theses or dissertations. 37 (90%) studies used quantitative research methods, 2 (5%) qualitative and 2 (5%) mixed methods. 21 (51%) studies investigated both financial and non-financial interests, 6 (15%) solely financial interests, 5 (12%) solely non-financial interests and 9 (22%) did not report the type of interest. We organised included studies based on study aims, with some studies having multiple aims: impact on recommendations (one study), occurrence of peer reviewers' conflicts of interest (11 studies), stakeholders' experiences (13 studies) and policy and management (22 studies). One (2%) study investigated the impact of peer reviewers' personal connections with authors on reviewers' recommendations. Nine (22%) studies estimated prevalences of conflicts of interest among peer reviewers, ranging from 3%-91%. Two (5%) studies both reported that conflicts of interest were a reason for declining to review in 1% of cases. 13 (32%) studies investigated stakeholders' experiences with peer reviewers' conflicts of interest, primarily using questionnaires of reviewers, editors and researchers. 16 (39%) studies estimated prevalences of having conflict of interest policies for peer reviewers, ranging from 5%-96%, among journals, conferences and clinical guideline organisations. Finally, six (15%) studies estimated prevalences of public availabilities of reviewers' conflicts of interest declarations, ranging from 0%-71%.
    CONCLUSIONS: Most studies addressed conflicts of interest in peer review of journal manuscripts, primarily through surveys of journal policies or questionnaires of researchers, editors and peer reviewers. The impact of peer reviewers' conflicts of interest on recommendations and their prevalence is still poorly understood. Our results can guide future studies and be used to align policies and management of peer reviewers' conflicts of interest.
    STUDY REGISTRATION: Open Science Framework (DOI: 10.17605/OSF.IO/9QBMG).
    Keywords:  Conflict of Interest; Publishing
    DOI:  https://doi.org/10.1136/bmjebm-2024-112967
  4. Adv Physiol Educ. 2025 Mar 01. 49(1): 77-78
      
    Keywords:  motivation; peer review; publishing; writing
    DOI:  https://doi.org/10.1152/advan.00229.2024
  5. Account Res. 2025 Jan 08. 1-6
      Peer reviewers provide a critical role in helping journals keep publishing. To understand the rewards and incentives offered to peer reviewers, we assessed what journals/publishers offered to one peer reviewer in biomedicine over a 1-month period (June 2023). After receiving 88 peer reviewer invitations, we noted that incentives were minimal. They include access to journal/publisher peer review training materials, reduced author processing charges of future article submissions, and free access to the journal/publisher website. Depending on the acceptance rate (30% or 50%) of recommendations to publish the article, peer review from this sample could generate anywhere from $USD 897,000 to $USD 1.45 million dollars when annualized. However, little, if any of this revenue is shared directly or indirectly with peer reviewers. With almost no reciprocity in the peer review process, journals and their publishers need to promote and establish more reciprocity in a system that currently largely favors them disproportionately. This study is an anecdotal perspective of one peer reviewer's experience over a single month. While anecdotal, these findings highlight issues about the fairness and sustainability of the peer review system. We encourage others to expand on what we have done and include more empirical investigations.
    Keywords:  Manuscript peer review; equity, article processing charge; reciprocity
    DOI:  https://doi.org/10.1080/08989621.2025.2450451
  6. Eur Urol. 2025 Jan 06. pii: S0302-2838(24)02765-9. [Epub ahead of print]
      Peer review and comments from reviewers are part of the submission process for scientific papers. We provide tips on how best to respond to reviewers, and point out the most common mistakes that authors make. The ultimate goal is to work with reviewers and editors to improve the quality of a paper so that it is accepted for publication.
    DOI:  https://doi.org/10.1016/j.eururo.2024.12.014
  7. Head Neck Pathol. 2025 Jan 07. 19(1): 3
      
    Keywords:  Article; Journal; Manuscript; Pathology; Publication; Review
    DOI:  https://doi.org/10.1007/s12105-024-01740-4
  8. J Allergy Clin Immunol Glob. 2025 Feb;4(1): 100373
    IChat Group
       Background: The use of artificial intelligence (AI) in scientific writing is rapidly increasing, raising concerns about authorship identification, content quality, and writing efficiency.
    Objectives: This study investigates the real-world impact of ChatGPT, a large language model, on those aspects in a simulated publication scenario.
    Methods: Forty-eight individuals representing 3 medical expertise levels (medical students, residents, and experts in allergy or dermatology) evaluated 3 blinded versions of an atopic dermatitis case report: one each human written (HUM), AI generated (AI), and combined written (COM). The survey assessed authorship, ranked their preference, and graded 13 quality criteria for each text. Time taken to generate each manuscript was also recorded.
    Results: Authorship identification accuracy mirrored the odds at 33%. Expert participants (50.9%) demonstrated significantly higher accuracy compared to residents (27.7%) and students (19.6%, P < .001). Participants favored AI-assisted versions (AI and COM) over HUM (P < .001), with COM receiving the highest quality scores. COM and AI achieved 83.8% and 84.3% reduction in writing time, respectively, compared to HUM, while showing 13.9% (P < .001) and 11.1% improvement in quality (P < .001), respectively. However, experts assigned the lowest score for the references of the AI manuscript, potentially hindering its publication.
    Conclusion: AI can deceptively mimic human writing, particularly for less experienced readers. Although AI-assisted writing is appealing and offers significant time savings, human oversight remains crucial to ensure accuracy, ethical considerations, and optimal quality. These findings underscore the need for transparency in AI use and highlight the potential of human-AI collaboration in the future of scientific writing.
    Keywords:  ChatGPT; Generative Pre-training Transformer (GPT); artificial intelligence; large language model (LLM); medical survey; scientific writing
    DOI:  https://doi.org/10.1016/j.jacig.2024.100373
  9. J Nurs Adm. 2024 Dec 01. 54(12): 657-663
      Disseminating research or evidence-based practice is not straightforward. As more clinical nurses, executive nurse leaders, nurse scientists, and faculty contribute to new knowledge, there is an increasing need to support the processes to publish and disseminate manuscripts to advance healthcare. Nurse administrators and leaders are key influencers and supporters to bolster expertise and resources to publish. This article provides nurse leaders and administrators clear, actionable steps to enable successful publication outcomes.
    DOI:  https://doi.org/10.1097/NNA.0000000000001509
  10. Cardiovasc Diagn Ther. 2024 Dec 31. 14(6): 1070-1082
       Background: The adherence to the Animals in Research: Reporting In Vivo Experiments (ARRIVE) guidelines across the journals that initially published the guidelines and if adherence has improved since the guidelines update, remains unknown. We aimed to quantify the level of adherence and analyze factors that might influence reporting quality among these journals.
    Methods: This cross-sectional study retrospectively analyzed interventional animal experiments published in journals that released ARRIVE 1.0 and 2.0 guidelines in three periods: 5 years before (Pre-ARRIVE 1.0) and after (Post-ARRIVE 1.0) the publication of ARRIVE 1.0, and 1 year after the publication of ARRIVE 2.0 (Post-ARRIVE 2.0). Reviewers independently assessed adherence to the ARRIVE guidelines. Basic information and potential influencing factors were extracted. Adherence data were presented as frequency (percentages). Statistical factors influencing reporting quality were evaluated using the Chi-square test or Fisher's exact test.
    Results: 215, 330, and 398 experiments were included during Pre-ARRIVE 1.0, Post-ARRIVE 1.0 and Post-ARRIVE 2.0 periods, respectively. None of the included 943 studies reported all 38 subitems, showing only 0%, 0%, and 0.25% studies had an "excellent" reporting quality across the three periods. The overall reporting quality was significantly improved among Pre-ARRIVE 1.0, Post-ARRIVE 1.0 and Post-ARRIVE 2.0 (P<0.001). The rate of studies with "average" reporting quality increased sequentially from 53.95% to 73.94% and then to 90.20%, and those with "poor" reporting quality decreased sequentially from 46.05% to 26.06% and then to 9.55% across the three periods. Specifically, 15 out of 38 (39.5%) subitems and 11 out of 27 (40.7%) similar and comparable subitems demonstrated a significant higher percentage of "fully reported" in Post-ARRIVE 1.0 compared to Pre-ARRIVE 1.0 and in Post-ARRIVE 2.0 compared to Post-ARRIVE 1.0, respectively (P<0.05). Country and journal indexing did not significantly affect reporting quality (both P>0.05). However, significant differences in reporting quality were found among the mandatory adherence to the ARRIVE guidelines in the author's instructions and reference to ARRIVE in the manuscript (both P<0.001).
    Conclusions: In the journals that initially published the ARRIVE guidelines, compliance with the guidelines still has room for improvement, though it has increased sequentially since introducing the guidelines. Implementing mandatory adherence requirements in the author's instructions and explicitly recognizing adherence to ARRIVE in articles could enhance the reporting quality of interventional animal experiments.
    Keywords:  Animals in Research: Reporting In Vivo Experiments guidelines (ARRIVE guidelines); adherence; animal experiments; in vivo study; reporting quality
    DOI:  https://doi.org/10.21037/cdt-24-413
  11. Braz Oral Res. 2024 ;pii: S1806-83242024000100503. [Epub ahead of print]38 e135
      The objective of this study was to evaluate Brazilian dental researchers' perceptions of research integrity and open science practices, as well as their perceptions of the way researchers are evaluated for promotion, hiring, and receiving grants. In a self-administered online survey, the respondents were presented with 3 questions on researcher evaluation in Brazil. Additionally, for 25 academic activities or characteristics, researchers rated their perceived importance for a) career advancement, b) science advancement, c) personal satisfaction, and d) social impact. The questionnaire was sent to a total of 2,179 dental researchers working in graduate programs in dentistry in Brazil. Multilevel regressions were performed to statistically confirm the differences between the predefined subgroups. Three hundred and fifty-five (16%) researchers completed the survey. Most respondents (96.1%) considered the current evaluation system to be flawed and indicated the need for improvement. Non-traditional activities were considered more important than traditional ones for science advancement (p < 0.01), and social impact (p < 0.01), whereas traditional activities were perceived to be more important only for career advancement (p < 0.01). Although Brazilian dental researchers recognize the value of open science and research integrity practices for science advancement and impact on society, they perceive that the current evaluation system emphasizes traditional activities, such as publishing many papers in well-recognized journals as criteria for advancing their careers.
    DOI:  https://doi.org/10.1590/1807-3107bor-2024.vol38.0135
  12. J Hand Surg Eur Vol. 2025 Jan 09. 17531934241307497
      In this article, we examine the pros and cons of textbook vs. journal articles. We suggest that textbooks serve as an essential knowledge provider for colleagues, especially at their entry level, but to advance clinical and academic capability, journal articles remain an important and unreplaceable tool for continuous professional development. Currently multi-author review articles provide one of the best sources of information, providing recommendations that are authoritative yet balanced. We explored if there are options to combine the best of both these platforms of information.
    Keywords:  Journal articles; learning resource; textbooks
    DOI:  https://doi.org/10.1177/17531934241307497
  13. Zool Res. 2025 Jan 18. pii: 2095-8137(2025)01-0001-02. [Epub ahead of print]46(1): 1-2
      
    DOI:  https://doi.org/10.24272/j.issn.2095-8137.2024.465
  14. J Exp Orthop. 2025 Jan;12(1): e70117
      The official medical journals of scientific societies advocate for high-quality standards. It's important to assess whether randomized controlled trials (RCTs) in influential journals, such as the hybrid journal of the European Society of Sports Traumatology, Knee Surgery, and Arthroscopy (ESSKA), adhere to reporting guidelines and best practices. Therefore, the present scoping review aimed to explore and map the reporting practices and methodological quality in recent RCTs published in the Knee Surgery, Sports Traumatology, Arthroscopy (KSSTA) journal, focusing on identifying gaps in adherence to reporting guidelines and transparency. The study was preregistered and followed the PRISMA-ScR checklist. RCTs published in KSSTA between 2022 and 2023 were included. The search was conducted via PubMed. A two-stage selection process was employed, with two independent reviewers conducting study selection and data extraction. Data collected included study characteristics, intervention details, sample size calculation reporting, data transparency, and adherence to Consolidated Standards of Reporting Trials (CONSORT) guidelines. Critical appraisal was conducted using the JBI tool for RCTs. All included RCTs (n = 25) reported a predetermined minimum sample size. Study protocol preregistration was reported in 52% of the RCTs, while only 24% provided data availability statements. Most RCTs offering data availability indicated data would be shared upon request. Adherence to CONSORT guidelines was reported in 96% of studies, with only one RCT not adhering to recognized reporting standards. All the included studies adequately addressed statistical conclusion validity. However, internal validity was less consistently addressed across the studies.
    Conclusions: While most recently published RCTs in KSSTA adhered to CONSORT guidelines, there is potential for improvement in the reporting of protocol preregistration and data availability statements. Although all studies reported sample size calculations, transparency in data sharing remains limited.
    Level of Evidence: Level I.
    Keywords:  ESSKA; KSSTA; adherence to guidelines; randomised controlled trial; risk of bias
    DOI:  https://doi.org/10.1002/jeo2.70117
  15. J Exp Psychol Hum Percept Perform. 2025 Jan;51(1): 3-4
      This editorial reflects on the significant role of the Journal of Experimental Psychology: Human Perception and Performance in the author's career and outlines key changes that demonstrate its evolution. She discusses three key areas she has focused on over the years: the diversity of our journal's contributors and editors (focusing on gender representation), the quality standards of our research (specifically, study sample sizes), and the analytical methodologies we endorse (namely, the use of Bayesian statistics). She compares how the journal fared when she started in 2017 compared to its first year, and the progress the journal has made since 2017. (PsycInfo Database Record (c) 2025 APA, all rights reserved).
    DOI:  https://doi.org/10.1037/xhp0001261
  16. J Korean Med Sci. 2025 Jan 06. 40(1): e76
      We analyzed the publication and submission statuses of Korean medical journals from 2010 to 2024, amidst challenges impacting researchers. Data from 58 domestic journals identified through the 2023 JCR database were used to assess publication status, while data from the Journal of Korean Medical Science (JKMS) were utilized to examine submission status. The proportion of published original articles by domestic authors decreased by 3% in 2024 compared to 2023. Submissions to JKMS also decreased overall, except for slight increases in May and October 2024. In contrast, international submissions to JKMS showed consistent growth, surpassing the 15-year average, reflecting growing global interest. Addressing issues, including medical school admission policies and the lingering effects of coronavirus disease 2019, is vital to ensure a sustainable and thriving medical research environment in Korea.
    Keywords:  Journal Article; Peer Review, Research; Publishing; Republic of Korea
    DOI:  https://doi.org/10.3346/jkms.2025.40.e76
  17. FEBS J. 2025 Jan;292(1): 5-10
      The FEBS Journal publishes primary papers as well as reviews in the molecular life sciences relating to the molecules and mechanisms underpinning biological processes. Editor-in-Chief Seamus Martin shares some thoughts on the nature of conducting research, some highlights of the past year at the journal, and what is in store for 2025.
    Keywords:  annual editorial; scientific publishing; scientific reproducibility; the scientific method
    DOI:  https://doi.org/10.1111/febs.17392
  18. Zdr Varst. 2025 Mar;64(1): 1-4
      The Slovenian Journal of Public Health, established 63 years ago as the official publication of the National Institute of Public Health in Slovenia, was initially aimed at tracking the development of public health in Slovenia and disseminating scientific advancements to professionals in the field. In 2000, a new editorial board took over and shifted the journal's focus towards enhancing scientific rigour and achieving international recognition. This strategic transformation led to the journal being indexed in the Social Sciences Citation Index (SSCI) in 2009, specifically within the category of Public, Environmental & Occupational Health. The indexing enabled the journal to acquire its first impact factor in 2011, which has demonstrated a consistent upward trajectory, currently standing at 1.6 (IF2023). The journal has recently ascended to the third quartile of its field and is now recognised as the second highest-ranked medical journal in Slovenia. Following over two decades of successful leadership, the journal is poised to enter a new phase under an incoming editor-in-chief. It is imperative for the journal to sustain its contributions to public health by promoting high-quality scientific publications and facilitating critical discourse among researchers.
    Keywords:  Editorial teams; International; Public health; Scientific publishing; scientific journals
    DOI:  https://doi.org/10.2478/sjph-2025-0001
  19. FEBS J. 2025 Jan 07.
      The FEBS Journal editorial team reviews the articles we published in 2024 and reflects on the year's highlights. The articles summarised here broadly cluster in three themes-molecular and cell biology across species, immunology, and cutting-edge methods-whilst still showcasing the diversity of the scientific fields the journal covers. We look forward to many more excellent articles in 2025 and hope these highlights will inspire you to submit your next manuscript to The FEBS Journal.
    Keywords:  FEBS; cell biology; cryo‐EM; immunology; molecular biology
    DOI:  https://doi.org/10.1111/febs.17378
  20. Emerg Med J. 2025 Jan 07. pii: emermed-2024-214743. [Epub ahead of print]
      
    Keywords:  Healthcare Disparities; publications; research
    DOI:  https://doi.org/10.1136/emermed-2024-214743