bims-traimu Biomed News
on Trained immunity
Issue of 2026–08–02
twenty papers selected by
Yantong Wan, Southern Medical University



  1. Front Immunol. 2026 ;17 1822395
      Chronic rhinosinusitis (CRS) is a highly prevalent and debilitating inflammatory condition of the upper airway, affecting 5-28% of the global population and imposing a substantial socioeconomic burden. Despite major advances in endoscopic sinus surgery, pharmacological management, and targeted biologic therapies, long-term disease recurrence following treatment remains an unresolved clinical challenge. Current pathophysiological frameworks centered on adaptive type 2 immunity, eosinophilic inflammation, and pathogen persistence fail to fully account for the chronification and therapy resistance of CRS. Emerging evidence positions trained immunity (the epigenetic and metabolic reprogramming of innate immune cells enabling non-antigen-specific functional memory) as a fundamental and previously underappreciated mechanism driving CRS recurrence. Persistent sinonasal microbial colonizers, including Staphylococcus aureus biofilms and fungal components, along with viral pathogens and dysbiotic microbiome communities, function as potent epigenetic training stimuli that reprogram sinonasal macrophages, group 2 innate lymphoid cells (ILC2s), and epithelial progenitor cells. The recent identification of a TLR4+ trained ILC2 subset in nasal polyp tissue, sustained by AP-1-driven chromatin remodeling at the Tlr4 locus, exemplifies the cellular specificity of this phenomenon. Concurrently, nasal basal stem cells acquire heritable pro-inflammatory chromatin states following type 2 cytokine exposure, encoding an epithelial inflammatory memory that perpetuates mucosal dysfunction independent of ongoing stimulation. This review systematically examines the microbial triggers, epigenetic mechanisms, key cellular mediators, and therapeutic implications of trained immunity in CRS, proposing a new framework for disease-modifying strategies targeting the sinonasal epigenetic inflammatory landscape.
    Keywords:  chronic rhinosinusitis; innate immune memory; mucosal inflammation; nasal polyp; trained immunity
    DOI:  https://doi.org/10.3389/fimmu.2026.1822395
  2. Periodontol 2000. 2026 Jul 29.
       BACKGROUND: Despite successful reduction of bacterial load and clinical inflammation following periodontal therapy, high recurrence rates indicate that prior infections induce lasting host alterations, maintaining latent disease susceptibility AIM: This review elucidates the biological basis of periodontal recalcitrance through innate immune memory (trained immunity), examining durable functional reprogramming at both local and systemic levels.
    MATERIALS AND METHODS: We comprehensively searched PubMed/MEDLINE and Scopus databases for peer-reviewed literature published primarily within the last decade (up to 2026). The search strategy utilized combinations of terms including "periodontitis", "trained immunity", "epigenetic reprogramming", "bone marrow axis", and "clonal hematopoiesis". Mechanistic, multi-omics, and clinical data were evaluated and synthesized, focusing on local resident cell reprogramming, ectopic lymphoid organogenesis, the periodontium-bone marrow axis, and clonal hematopoiesis.
    RESULTS: Current evidence supports the existence of a multi-level immunological imprint. Locally, gingival fibroblasts and resident immune cells acquire stable epigenetic modifications and undergo glycolytic shifts. These changes lower their activation thresholds, generating a hyper-responsive microenvironment sustained by Tertiary Lymphoid Structures. Systemically, periodontal inflammation transmits endocrine signals (IL-1β, type I interferons) to hematopoietic stem and progenitor cells. This central adaptation biases myeloid differentiation and establishes heritable epigenetic priming, accelerating the output of hyper-reactive neutrophils. Additionally, age-related Clonal Hematopoiesis of Indeterminate Potential (CHIP) amplifies this inflammatory dysregulation.
    CONCLUSIONS: Periodontitis recurrence is fundamentally driven by maladaptive immunological memory. This persistent state is encoded via epigenetic and metabolic reprogramming within local tissues and central hematopoietic niches, exacerbating destruction upon microbial restimulation.
    CLINICAL RELEVANCE: Achieving true biological resolution in periodontitis requires a paradigm shift from solely controlling the biofilm to incorporating targeted host-modulatory therapies that resolve these maladaptive epigenetic and metabolic adaptations.
    Keywords:  clonal hematopoiesis; epigenetic reprogramming; hematopoiesis; immunological memory; periodontitis; trained immunity
    DOI:  https://doi.org/10.1111/prd.70069
  3. J Clin Periodontol. 2026 Jul 28.
       AIM: To investigate whether Porphyromonas gingivalis aggravates colitis through trained immunity, and to elucidate the underlying metabolic and epigenetic mechanisms.
    MATERIALS AND METHODS: In vivo, bone marrow from P. gingivalis-infected mice was transplanted into recipient mice, followed by induction of colitis. In vitro, macrophages trained with P. gingivalis were subjected to lipopolysaccharide (LPS) re-stimulation to assess inflammatory cytokine production. Histone acetylation and untargeted metabolomic analysis were examined in P. gingivalis-infected macrophages.
    RESULTS: Recipient mice transplanted with bone marrow from P. gingivalis-infected donors developed more severe colitis. Moreover, macrophages trained with P. gingivalis showed an enhanced inflammatory response upon LPS re-stimulation. Mechanistically, histone H3 lysine 27 acetylation (H3K27ac) was markedly increased following P. gingivalis infection and remained elevated after its removal. Furthermore, P. gingivalis drives a metabolic shift towards glycolysis, which reduces nicotinamide adenine dinucleotide (NAD+) levels and sirtuin 1 (SIRT1) activity, thereby attenuating SIRT1-mediated deacetylation of H3K27ac. Inhibiting glycolysis or activating SIRT1 reversed P. gingivalis-induced trained immunity and alleviated the aggravated colitis phenotype.
    CONCLUSIONS: P. gingivalis induces trained immunity via the glycolysis-SIRT1 axis and aggravates colitis. These findings provide a novel explanation for the persistent risk of colitis associated with periodontitis.
    Keywords:   Porphyromonas gingivalis ; H3K27ac; SIRT1; colitis; glycolysis; macrophages; trained immunity
    DOI:  https://doi.org/10.1111/jcpe.70179
  4. Int J Mol Sci. 2026 Jul 15. pii: 6282. [Epub ahead of print]27(14):
      Epigenetic regulation plays a central role in shaping innate immune responses following immunostimulant exposure. In this study, we characterized the epigenetic landscape of four histone modifications, H3K27ac, H3K27me3, H3K4me1, and H3K4me3, in the anterior kidney of Ictalurus punctatus (channel catfish) following β-glucan exposure. Using chromatin immunoprecipitation sequencing (ChIP-seq), we generated chromatin state maps and examined the regulatory potential of these histone marks in relation to transcriptional responses. Genes showing increased expression associated with H3K4me3 up-peaks included regulators of metabolism, signaling, pathogen recognition, and immune regulation, while H3K27ac and H3K4me1 marks were linked to genes involved in apoptosis, cytoskeletal dynamics, autophagy, cell adhesion, and stress responses. In contrast, H3K27me3-associated gene repression appeared to fine-tune immune activation by selectively maintaining transcriptional restraint at specific loci. Further transcriptional regulatory-related genes were significantly enriched, suggesting metabolic adaptation following β-glucan exposure. Collectively, these findings define the epigenetic landscape of key histone marks in channel catfish following β-glucan exposure and reveal coordinated chromatin and transcriptional remodeling, consistent with mechanisms of trained immunity. This work provides novel insight into conserved epigenetic features of innate immune memory in teleost fish and supports the use of β-glucan as a functional immunomodulator in aquaculture.
    Keywords:  channel catfish; chromatin landscape; epigenetic changes; trained immunity; β-glucan
    DOI:  https://doi.org/10.3390/ijms27146282
  5. Cell Rep. 2026 Jul 24. pii: S2211-1247(26)00783-7. [Epub ahead of print]45(8): 117705
      The airway epithelium forms the frontline interface between the external environment and the respiratory system and is constantly exposed to microbes and their constituents. Epidemiological and preclinical evidence increasingly highlights an important role for microbial factors in shaping long-term respiratory health by maintaining immune homeostasis and modulating exacerbations in chronic inflammatory diseases. Here, we argue that these durable effects are likely due to "imprinting" events at the epithelial interface. Emerging evidence indicates that microbes can functionally imprint the airway epithelium through metabolic and epigenetic reprogramming, thereby shaping subsequent responses to microbial and inflammatory stimuli. We propose a conceptual framework of epithelial imprinting comprised of four categories: differentiation, tolerance, priming and trained immunity. This framework provides an important foundation for the mechanistic dissection of epithelial memory in the airways and highlights novel therapeutic opportunities to harness microbial factors to modulate respiratory health.
    Keywords:  CP: immunology; CP: microbiology; airway epithelium; epithelial memory; microbial imprinting; microbiome; respiratory health
    DOI:  https://doi.org/10.1016/j.celrep.2026.117705
  6. bioRxiv. 2026 Jul 23. pii: 2026.07.20.739619. [Epub ahead of print]
      Plasmodium parasites, the causative agents of malaria, are transmitted at high levels in endemic areas and sequential infections are common. Using a mouse model of infection we discovered liver burden was suppressed in blood-stage experienced, compared to naïve, animals, independently of adaptive responses and inflammation. We observed greater chromatin accessibility of a subset of interferon stimulated genes in blood-stage experienced animals, and a rapid increase in transcription of these genes upon sporozoite challenge. Ex vivo stimulation of hepatocytes from blood-stage experienced mice also led to a rapid and elevated response upon treatment with an unrelated antigen, ctDNA. Taken together, these data are consistent with a model in which hepatocytes are reprogramed by blood stage Plasmodium infection to exhibit trained memory akin to what has been described in innate immune cells. The consequences of training of hepatocytes could be wide-reaching and might alter responses to diverse pathogens and other stimuli.
    DOI:  https://doi.org/10.64898/2026.07.20.739619
  7. Biol Open. 2026 Jul 30. pii: bio.062421. [Epub ahead of print]
      Parental transfer of immune memory can increase offspring survival, although its benefits may vary across developmental stages. We investigated transgenerational innate immune priming in the fall armyworm (Spodoptera frugiperda) infected with the fungus Metarhizium brunneum. Using a split-design, fathers and mothers were exposed to a low-dose fungal challenge at larval stages L5 or L6, and their offspring were subsequently challenged with a high dose at L5 or L6. We assessed survival, development, immune responses (phenoloxidase, lytic activity), and oxidative stress (total antioxidant capacity, catalase, superoxide dismutase, hydrogen peroxide). Parental immune activation at either instar had no significant effect on offspring survival. However, offspring responses were stage-dependent: L5 larvae in the memory group (homologous challenge) showed higher survival than heterologous or L6-challenged larvae. No L6-challenged larvae reached adulthood. The L5 memory group developed more slowly than controls, while all L6 larvae failed to complete development. Immune response and oxidative stress were higher in L6 larvae, but immune priming effects did not differ. These results suggest that developmental constraints and self-inflicted damage from immune and oxidative responses limit immune priming efficiency at later stages. Our findings highlight that transgenerational immune priming is strongly influenced by the developmental stage at which offspring are challenged.
    Keywords:  Ecoimmunology; Immune memory; Immune training; Spodoptera; Trade-offs; Trained immunity
    DOI:  https://doi.org/10.1242/bio.062421
  8. Front Immunol. 2026 ;17 1775087
      The development of effective and broadly protective vaccines against SARS-CoV-2 remains a global priority. Conserved epitopes from viral structural proteins (E, M, N, and S) represent promising targets less affected by emerging mutations, while Bacillus Calmette-Guérin (BCG) offers unique adjuvant and delivery properties. This study aimed to validate conserved SARS-CoV-2 epitopes in combination with BCG and to design multiepitope vaccine constructs in silico. Dot blot assays confirmed recognition of five synthetic peptides by sera from convalescent patients. In vitro, BCG-peptide formulations activated the MAPK pathway and induced trained immunity signatures in macrophages. In vivo, immunized mice showed modulation of IgG subclasses and increased IL-6, TNF-α, and IFN-γ production. Splenocytes from vaccinated animals secreted high cytokine levels upon restimulation, suggesting memory responses. In silico modeling indicated stable, antigenic, and non-allergenic multiepitope constructs with favorable immune simulations. Together, these findings highlight BCG-epitope formulations as promising next-generation vaccine candidates against SARS-CoV-2.
    Keywords:  BCG vaccine; SARS-CoV-2; conserved epitopes; multi-epitope vaccine; trained immunity
    DOI:  https://doi.org/10.3389/fimmu.2026.1775087
  9. mBio. 2026 Jul 27. e0149126
      The innate immune response to pathogens often involves metabolic reprogramming, such as disruption of the Krebs cycle, leading to the accumulation of various metabolites that can further influence innate cell responses during infection. Of these, the immunomodulatory metabolite itaconate has been shown to positively or negatively influence lung immune responses, depending on the pathogen. In the current study, we found that mice deficient in aconitate decarboxylase (Acod1-/- mice), the enzyme that produces itaconate from cis-aconitate, cleared the opportunistic mold Aspergillus fumigatus from the lung more effectively than wild-type (WT) control mice. Augmented fungal clearance in Acod1-/- mice correlated with increased type 17 responses, which themselves correlated with higher IL-1β, PGE2, and γδ T cell levels. Intriguingly, we show that alveolar macrophages and neutrophils from naïve Acod1-/- mice kill A. fumigatus more efficiently. Conversely, the addition of exogenous itaconate to alveolar macrophages and neutrophils from naïve WT mice reduced their antifungal capacity. Mechanistically, alveolar macrophages, but not neutrophils, from naïve Acod1-/- mice demonstrated enhanced ROS production when stimulated with A. fumigatus. We further show that mice with macrophage-specific, but not neutrophil-specific, Acod1 deficiency cleared A. fumigatus more effectively. Itaconate deficiency also protected against fungus-induced mortality during corticosteroid-mediated immunosuppression. Finally, itaconate reduced the antifungal activity of human monocyte-derived macrophages. Collectively, these data identify an immune regulatory role for itaconate during A. fumigatus fungal pneumonia and potentially identify a new therapeutic target for enhancing protection against A. fumigatus.IMPORTANCEFungal infections by invasive molds such as Aspergillus fumigatus are leading causes of morbidity and mortality in immunocompromised individuals, such as patients with hematologic malignancies, and recipients of hematopoietic stem cell transplant (HCT), solid organ transplant (SOT), and cellular therapies. A major shift in the increased incidence of these infections is a result of a rapidly expanding global immunocompromised population due to targeted immunotherapies and biologics for the treatment of cancer, combination therapies, cellular therapies, and bispecific and trispecific antibody therapies. The advancement in these immunomodulatory/immunosuppressive therapies is outpacing our understanding of mechanisms that lead to the development of infections such as invasive aspergillosis. Therefore, the continuing evolution of our understanding of protective and immunoregulatory responses would be expected to reveal new mechanisms that govern susceptibility to fungal pneumonia. To this end, in the current report, we show that the TCA cycle intermediate itaconate hinders lung clearance of A. fumigatus via regulating multiple immune mechanisms. Overall, our study uncovers a new mechanism of immune regulation during fungal pneumonia.
    Keywords:  fungal; innate immunity; lung defense
    DOI:  https://doi.org/10.1128/mbio.01491-26
  10. Cell Rep. 2026 Jul 27. pii: S2211-1247(26)00814-4. [Epub ahead of print]45(8): 117736
      Host-gut microbiota metabolic interactions are implicated in the pathogenesis of ulcerative colitis (UC), but the underlying mechanisms of certain metabolites remain ambiguous. Here, we revealed an impaired bile acid homeostasis in UC with a significant deficiency of hyodeoxycholic acid (HDCA), which was inversely correlated with the severity of UC. Ruminococcus callidus was linked to altered HDCA generation, and colonization of R. callidus increased HDCA concentrations via bile salt hydrolase. Single-cell RNA sequencing (ScRNA-seq) indicated that HDCA reshaped the intestinal macrophage landscape by enriching a metabolically rewired Mrc1+ macrophage subpopulation with immunosuppressive features. Mechanistically, HDCA enhanced PPARγ-mediated fatty acid metabolism reprogramming to alleviate inflammation, which was blunted in myeloid PPARγ-deficient mice. HDCA triggered fatty acid oxidation to promote ATP citrate lyase-dependent histone acetylation, supporting epigenetics-mediated gene regulation and the phenotypic modification of macrophages. These findings uncover a unique mechanism of gut microbiota-derived HDCA regulating metabolism, providing therapeutic potential for UC.
    Keywords:  CP: immunology; CP: metabolism; fatty acid oxidation; histone acetylation; hyodeoxycholic acid; peroxisome proliferator-activated receptor γ; ulcerative colitis
    DOI:  https://doi.org/10.1016/j.celrep.2026.117736
  11. Mol Syst Biol. 2026 Jul 29.
      Macrophages function as immune sentinels that distinguish diverse threats and mount appropriate responses. This stimulus-response specificity (SRS) is partly encoded in the dynamics of the NFκB transcription factor. While most studies examine single ligands, physiological exposures involve complex multi-ligand mixtures. Using a mathematical model that captures heterogeneous single-cell NFκB responses, we generated simulation datasets for mixtures of up to five ligands and validated key predictions with live-cell microscopy. Following iterative refinement of the model, we quantified SRS with Wasserstein distance and machine learning classification and found that NFκB temporal coding can partially convey the presence of specific ligands within mixtures. By generating simulation datasets across all ligand pairs at doses spanning the full responsiveness range, we found several cases of synergy and antagonism between stimuli. Antagonism was for example the result of a limited supply of stimulus-cofactor CD14 or endosomal transport capacity. Synergy depended on ultra-sensitive IKK activation in cells with low receptor expression. While synergy does not enhance SRS, antagonism between TLR9 and TLR3 signaling pathways due to endosomal transport competition may enhance the distinguishability of CpG-pIC from ligand mixtures. These studies therefore identified antagonism mechanisms in signaling pathways as key to maintaining immune specificity under complex conditions.
    DOI:  https://doi.org/10.1038/s44320-026-00230-9
  12. Neoplasia. 2026 Jul 28. pii: S1476-5586(26)00069-2. [Epub ahead of print]80 101339
      Chronic inflammation increases cancer risk, yet the mechanisms linking transient injury to long-term susceptibility remain elusive. Nagaraja et al [1] demonstrate that intestinal stem cells retain durable epigenetic memory of colitis, thereby priming tumorigenesis. This discovery reframes cancer initiation as a consequence of heritable chromatin states, introducing an additional regulatory dimension that operates alongside, and beyond, genetic aberrations. By positioning inflammation induced epigenetic memory as a novel axis for cancer predisposition, this study open avenues for biomarker development and preventive therapeutic strategies.
    Keywords:  Cancer; Colitis; Epigenetic memory; Inflammation
    DOI:  https://doi.org/10.1016/j.neo.2026.101339
  13. Cell Rep. 2026 Jul 30. pii: S2211-1247(26)00779-5. [Epub ahead of print]45(8): 117701
      Heat stroke causes life-threatening systemic inflammation and multiorgan injury, but the intracellular mechanisms that sustain inflammatory amplification after heat exposure remain unclear. Here, using heat stroke mouse models, genetic NLRP3 deletion, pharmacological inhibition, myeloid-specific NLRP3 deficiency, macrophage depletion, and heat-stressed macrophage systems, we show that tissue macrophage NLRP3 inflammasome activation is a central driver of interleukin-1β/interleukin-18 release, organ injury, and mortality. Mechanistically, heat stroke enhances phospholipase C delta 4 signaling, promotes diacylglycerol accumulation at trans-Golgi network/Golgi-associated membranes, recruits protein kinase D1, and increases phosphatidylinositol 4-kinase β-dependent phosphatidylinositol 4-phosphate production. This lipid remodeling supports NLRP3 recruitment, ASC speck formation, caspase-1 activation, and inflammatory cytokine release. Phospholipase C delta 4 knockdown preferentially suppresses NLRP3 activation induced by heat stroke, but not by canonical stimuli. These findings link heat stroke to membrane lipid remodeling and spatial inflammasome assembly, identifying a potential organ-protective pathway in heat stroke.
    Keywords:  CP: immunology; CP: metabolism; NLRP3 inflammasome; PI4KB; PI4P; PLCd4; heat stroke; macrophages; multiorgan injury
    DOI:  https://doi.org/10.1016/j.celrep.2026.117701
  14. Cell Rep. 2026 Jul 29. pii: S2211-1247(26)00823-5. [Epub ahead of print]45(8): 117745
      Memory-phenotype (MP) CD4+ T lymphocytes develop from peripheral naive precursors via self-recognition at homeostasis. While MP cells exert innate immune function in infectious and autoimmune contexts, their functional significance in ischemia-reperfusion injury (IRI) remains unclear. Here we show that blood-circulating MP lymphocytes rapidly infiltrate the gut in the absence of antigen recognition during intestinal IRI. This MP migration is directed by α4β7 that binds to vascular MAdCAM-1, with the latter's expression immediately upregulated by IRI-induced TNF-α. Once accumulated in the gut, MP cells respond to IL-12 to produce IFN-γ that elevates CXCL1 and CXCL2 levels and orchestrates neutrophils, thereby exaggerating tissue injury. Furthermore, such innate MP responses are operative in hepatic but not renal IRI. Together, our results reveal blood-circulating MP cells as a unique innate amplifier of IRI that rapidly accumulates in the gut to exacerbate tissue injury via neutrophil orchestration.
    Keywords:  CD4(+) T lymphocytes; CP: immunology; innate immunity; ischemia; memory phenotype
    DOI:  https://doi.org/10.1016/j.celrep.2026.117745
  15. J Immunol. 2026 Jul 10. pii: vkag203. [Epub ahead of print]215(7):
      The innate immune system can detect infection, tissue damage, and other homeostatic disruptions to initiate an immune response, drive inflammation, and promote programmed cell death. While these responses can be beneficial in host defense, aberrant activation of inflammatory, lytic cell death pathways can be pathogenic. Emerging evidence suggests that cellular metabolic disruption can promote inflammatory cell death, but the mechanistic connections between these processes are not well understood, limiting our ability to identify regulatory nodes that can be therapeutically targeted. Here, we found that intracellular levels of the metabolic cofactor nicotinamide adenine dinucleotide (NAD+) were depleted in response to cell death triggers that drive pyroptosis, necroptosis, PANoptosis, and ferroptosis. However, restoring NAD+ inhibited PANoptosis but not the other forms of cell death. Mechanistically, NAD+ restoration reduced the expression of PANoptotic sensors or regulators, including the transcription factor IRF1, a critical factor for innate immune sensor priming in PANoptosis. Our findings thereby suggest that NAD+ depletion is an early cell death signaling event and that restoring NAD+ levels specifically blocks PANoptosis by suppressing priming. Hence, targeting NAD+ metabolism represents a potential therapeutic strategy for infectious and inflammatory diseases associated with dysregulated PANoptosis.
    Keywords:  AIM2; NLRC5; NLRP12; NLRP3; ZBP1
    DOI:  https://doi.org/10.1093/jimmun/vkag203
  16. J Biol Chem. 2026 Jul 28. pii: S0021-9258(26)02242-8. [Epub ahead of print] 113370
      Cell death is a key effector mechanism of the innate immune system for host defense. While it is beneficial for pathogen clearance, excess lytic cell death is linked to inflammation, pathology, and disease. Therefore, tight regulation of cell death execution is critical. PANoptosis is an innate immune, lytic, and inflammatory cell death pathway initiated by innate immune sensors and driven by caspases and RIPKs, with roles in infection, inflammatory disease, and cancer. During PANoptosis, caspases and RIPKs within PANoptosome complexes activate multiple executioner proteins, including gasdermin (GSDM) family proteins and mixed lineage kinase domain-like pseudokinase (MLKL). These executioners form membrane pores that lead to membrane lysis and the release of DAMPs and cytokines. Although multiple executioners are activated during PANoptosis, the requirement for individual executioners in driving the lytic cell death remains unclear. To address this, we performed a comprehensive genetic analysis of GSDMD, GSDME, and MLKL using single, double, and triple knockout primary macrophages across triggers known to activate distinct PANoptosomes. Deletion of individual executioners did not reduce the activation of caspases or other executioners and did not fully block PANoptosis, suggesting these executioner molecules often act in a compensatory manner to execute PANoptosis. Furthermore, combined deletion of all three executioners provided greater protection than any single or double deletion. However, residual cell death still occurred even after genetic deletion of all three executioner proteins, suggesting the involvement of additional executioners that remain to be identified. Overall, our study suggests that targeting individual executioners will not be sufficient in disease contexts where PANoptosis drives pathology, and targeting the full executioner network or upstream molecules, such as sensors or essential PANoptosome complex components, will be needed for therapeutic efficacy in infection, inflammatory disease, and cancer.
    Keywords:  AIM2; GSDMD; GSDME; MLKL; NLR; NLRC5; NLRP12; NLRP3; PANoptosis; PANoptosome; RIPK1; RIPK3; ZBP1; caspase; caspase-1; caspase-8; cell death; executioner; gasdermin; inflammasome; innate immunity
    DOI:  https://doi.org/10.1016/j.jbc.2026.113370
  17. bioRxiv. 2026 Jul 13. pii: 2025.03.10.642106. [Epub ahead of print]
      Intracellular sensing of lipopolysaccharide (LPS) is an essential component of pathogen detection that governs the innate immune response. However, how this process is controlled to maintain homeostasis and resolve inflammation is unclear. Here, we show that MARCO is a decoy LPS sensor crucial for restraining caspase 11 activity and the non-canonical inflammasome. Remarkably, MARCO expression is controlled by a non-canonical TLR signaling pathway involving the metabolite itaconate, the autophagy adaptor protein p62, and the transcription factor NRF2. In the presence of IFN, non-canonical TLR signaling is impaired and NRF2 dependent gene expression is terminated. Thus, impairing MARCO expression and licensing optimal activation of the non-canonical inflammasome. Loss of MARCO augments non-canonical inflammasome activation and sensitizes mice to septic shock. Together, this study identifies MARCO as a previously unknown LPS sensor that is regulated by a non-canonical TLR signaling pathway and reveals an intricate homeostatic switch that allows for optimal immune responses and resolution of inflammation.
    DOI:  https://doi.org/10.1101/2025.03.10.642106
  18. EMBO Rep. 2026 Jul 29.
      Pathogens, tissue damage, and cellular stress are detected by innate immune sensor molecules to drive inflammatory signaling and cell death. Mutations in the sensor NLRP1 are associated with inflammatory disease, but the regulation of this sensor is not well understood. Here, we find that LPS, a TLR4 ligand and canonical activator of innate immunity, inhibits NLRP1-mediated caspase activation, IL-18 release, and inflammatory cell death, PANoptosis. This inhibition requires TRIF but not MyD88, implicating TRIF-dependent TLR signaling. IRF3 is also required, suggesting an essential role for type I IFN signaling. Indeed, IFN-β production or treatment with exogenous IFN-α or IFN-β inhibits NLRP1-dependent PANoptosis in mouse bone marrow-derived macrophages and human macrophages and monocytes. Mechanistically, Nlrp1b/NLRP1 expression is significantly reduced in LPS- or type I IFN-treated cells. Overall, our study identifies a TLR4-TRIF-IRF3 signaling axis that induces type I IFNs to negatively regulate NLRP1 transcription, thereby blocking NLRP1-driven, caspase-1/caspase-8/RIPK3-dependent PANoptosis. These findings suggest type I IFNs as a potential therapeutic strategy for NLRP1-driven inflammatory diseases.
    DOI:  https://doi.org/10.1038/s44319-026-00888-0
  19. Nature. 2026 Jul 29.
      Senescent cells promote tissue dysfunction in part through the senescence-associated secretory phenotype (SASP)1. Cytosolic mitochondrial nucleic acids activate innate immune signalling to initiate this inflammatory programme2,3. Here we show that mitochondrial metabolism provides a second layer of control that enables execution of the inflammatory programme. In senescent cells, the mitochondrial pyruvate-citrate-acetyl-CoA axis is upregulated, increasing the availability of acetyl-CoA to support histone acetylation at SASP genes. Whereas mitochondrial DNA-driven signalling activates inflammatory transcription factors, acetyl-CoA availability is required for robust transcription of SASP genes. Accordingly, enhancing acetyl-CoA levels promotes SASP gene expression, whereas inhibition of SLC25A1, the mitochondrial citrate exporter, reduces histone acetylation at SASP loci, limiting activity of this programme. In vivo, inhibition of SLC25A1 reduces chromatin accessibility at SASP loci, dampens inflammation and improves healthspan in aged mice. Together, these findings identify a mitochondrial metabolic checkpoint that enables the epigenetic execution of innate immune signalling, revealing a mechanism that selectively controls the inflammatory output of senescent cells.
    DOI:  https://doi.org/10.1038/s41586-026-10791-2
  20. J Cell Physiol. 2026 Aug;241(8): e70213
      Sepsis, characterized by a rapid transition to systemic immune dysregulation and multiorgan failure, poses a formidable clinical challenge. The lack of spatiotemporally stable biomarkers severely impedes early diagnosis and risk stratification. By integrating large-scale transcriptomic profiling with machine learning algorithms, this study identified a robust three-gene diagnostic signature (TLR5, HMGB2, and C19orf59). Single-cell RNA sequencing precisely localized the sepsis-induced specific upregulation of these targets to the myeloid immune compartment, notably monocytes and neutrophils. Crucially, disease severity stratification analysis (based on SOFA scores) revealed that while TLR5 and HMGB2 excel in identifying high-risk sepsis, C19orf59 maintains highly consistent diagnostic efficacy across all clinical severity strata. To definitively validate these findings while rigorously eliminating confounding effects from surgical or environmental stress, strictly time-matched sham-controlled cecal ligation and puncture (CLP) murine models and vehicle-controlled in vitro models were utilized. In vivo results corroborated the persistent in situ upregulation of this signature across vital target organs (lung, heart, liver) and systemic circulation. Parallel in vitro lipopolysaccharide (LPS)-stimulated cellular models further characterized their dynamic expression, with HMGB2 exhibiting a distinct biphasic kinetic profile mechanistically characteristic of danger-associated molecular patterns (DAMPs). Finally, independent clinical validation using sepsis patient serum corroborated the translational relevance of these targets. Collectively, this systematic multidimensional evaluation establishes TLR5, HMGB2, and C19orf59 as a highly reliable diagnostic and severity-stratification panel, providing novel molecular insights into the septic pathological cascade.
    Keywords:  diagnostic biomarkers; machine learning; sepsis; single‐cell analysis; spatiotemporal dynamics
    DOI:  https://doi.org/10.1002/jcp.70213